Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0002
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta... 46 1e-05
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta... 46 1e-05
At5g45620.2 68418.m05607 26S proteasome regulatory subunit, puta... 40 5e-04
At3g02200.2 68416.m00199 proteasome family protein contains Pfam... 30 0.68
At3g02200.1 68416.m00198 proteasome family protein contains Pfam... 30 0.68
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 29 1.2
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 29 1.2
At5g15610.2 68418.m01827 proteasome family protein contains Pfam... 29 1.6
At5g15610.1 68418.m01826 proteasome family protein contains Pfam... 29 1.6
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont... 28 2.1
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 28 2.7
At4g22070.1 68417.m03192 WRKY family transcription factor identi... 27 4.8
At3g07670.1 68416.m00919 SET domain-containing protein similar t... 27 4.8
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 27 6.3
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 27 6.3
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 27 6.3
At2g46960.2 68415.m05866 cytochrome P450 family protein similar ... 27 6.3
At2g46960.1 68415.m05865 cytochrome P450 family protein similar ... 27 6.3
>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
putative (RPN9) similar to 26S proteasome subunit p40.5
[Homo sapiens] gi|3618343|dbj|BAA33214
Length = 386
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ILCL+E+ F++ + R + IA ++ +++VE L+MK+L+ LIE I
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSVIAERTKLSIEDVEHLLMKSLSVHLIEGI 332
>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 386
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ILCL+E+ F++ + R + IA ++ +++VE L+MK+L+ LIE I
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332
>At5g45620.2 68418.m05607 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 350
Score = 40.3 bits (90), Expect = 5e-04
Identities = 17/46 (36%), Positives = 31/46 (67%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALA 267
KI ILCL+E+ F++ + R + IA ++ +++VE L+MK+L+
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSIIAERTKLSIEDVEHLLMKSLS 325
>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 417
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K+ +L L+++A ++S K+ + I ++ +VEL I+KA+ KLIE
Sbjct: 298 KMRLLSLVDLASDESG---KIPYTSIKDTLQVNEQDVELWIVKAITAKLIE 345
>At3g02200.1 68416.m00198 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 364
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K+ +L L+++A ++S K+ + I ++ +VEL I+KA+ KLIE
Sbjct: 298 KMRLLSLVDLASDESG---KIPYTSIKDTLQVNEQDVELWIVKAITAKLIE 345
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 261 LFSQSLHDEEFDFVEGYSGFTGYLLERQLPLR 356
LF +++ E V+ S +TG+L E Q+P+R
Sbjct: 8 LFGKTIPLPELGVVDSSSSYTGFLTETQIPVR 39
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 261 LFSQSLHDEEFDFVEGYSGFTGYLLERQLPLR 356
LF +++ E V+ S +TG+L E Q+P+R
Sbjct: 8 LFGKTIPLPELGVVDSSSSYTGFLTETQIPVR 39
>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 413
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
K+ +L L+++A + S K+ + I ++ +EVEL ++KA+ KL+
Sbjct: 298 KMRLLSLVDLASDDSG---KIPYASIKNTLQVNDEEVELWVVKAITAKLV 344
>At5g15610.1 68418.m01826 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 442
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
K+ +L L+++A + S K+ + I ++ +EVEL ++KA+ KL+
Sbjct: 298 KMRLLSLVDLASDDSG---KIPYASIKNTLQVNDEEVELWVVKAITAKLV 344
>At1g45616.1 68414.m05200 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to disease resistance
protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
Length = 994
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 149 GERRSPRPPTCWLPCSPTSSSLED 78
G+ +PRPP LP S +SSS ED
Sbjct: 922 GDIHAPRPPQAVLPHSSSSSSEED 945
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 395 ILCLMEMA--FNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
+LCL E+ N R EIAREA L V++LI K L + ++
Sbjct: 306 VLCLSEVTTQMNDPGKDRGALMGEIAREADNMLWMVDILIEKKLCSEFVK 355
>At4g22070.1 68417.m03192 WRKY family transcription factor identical
to WRKY transcription factor 31 (WRKY31) GI:15990589
from [Arabidopsis thaliana]
Length = 538
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +1
Query: 148 PRVHPRCRQHGACPGQXXXXXXXXXXXXXXLIYMSSINF---SAKAFMMRSSTSSRGILA 318
PR + RC G CP + Y + N A M ++T++ +L
Sbjct: 316 PRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLL 375
Query: 319 SRAISSNDSFL*DEDLL 369
S ++SS D + +LL
Sbjct: 376 SGSMSSQDGLMNPTNLL 392
>At3g07670.1 68416.m00919 SET domain-containing protein similar to
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I [Spinacia oleracea]
GI:3403236; contains Pfam profile PF00856: SET domain
Length = 504
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 368 NKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIED 249
NKS+ + LS+ + RE P D VEL + +K E+
Sbjct: 306 NKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEE 345
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
E DS++ D + S ++++ DSP S N + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
E DS++ D + S ++++ DSP S N + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
E DS++ D + S ++++ DSP S N + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286
>At2g46960.2 68415.m05866 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
Length = 519
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 395 ILCLMEMAFNKSSSQRKLSFEEIAREAR 312
+L ++ A+N +RK+S EEI E R
Sbjct: 293 LLGILLKAYNTEGKERKMSIEEIIHECR 320
>At2g46960.1 68415.m05865 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
Length = 403
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 395 ILCLMEMAFNKSSSQRKLSFEEIAREAR 312
+L ++ A+N +RK+S EEI E R
Sbjct: 177 LLGILLKAYNTEGKERKMSIEEIIHECR 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,547,328
Number of Sequences: 28952
Number of extensions: 100189
Number of successful extensions: 266
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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