Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0001
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    63   3e-11
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.26 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.59 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   0.78 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.78 
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   2.4  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.4  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   3.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   4.2  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   4.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   7.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.6  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    25   9.6  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 31/61 (50%), Positives = 37/61 (60%)
 Frame = +1

Query: 52  FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 231
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 232 K 234
           K
Sbjct: 64  K 64



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 258 LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSL 434
           +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+L
Sbjct: 73  IVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKAL 132

Query: 435 K 437
           K
Sbjct: 133 K 133


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 58  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 144
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 58  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 144
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -3

Query: 545 TITS*LVFWSPSCAHFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPI 366
           T++S    +  S  HF    F+  +   G +  S H   LE+GS     LN  S     I
Sbjct: 428 TLSSIQAVFLLSLYHFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSI 487

Query: 365 VIC 357
            IC
Sbjct: 488 RIC 490


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 365 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 267
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 VHSPYRLVRKAWTDAKLNEKWTESQWA 320
           VH PY  + +A+ D  +N+K  E  W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 258 LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 437
           L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K + 
Sbjct: 705 LSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMS 762

Query: 438 VKAARA 455
            ++A A
Sbjct: 763 RESAHA 768


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 231 QIRVHSPYRLVRKAWTDAKLNEKW 302
           Q  VH  +R   K W D K+  KW
Sbjct: 37  QDSVHDLWRRFVKRWNDGKMKSKW 60


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 526 FFGRLLVRTFFAAALGIFFLPKVPARAAFT-FKLL 425
           F GRL +R    AALG F +P +   +A + +KL+
Sbjct: 325 FDGRLFIRLVVDAALGEFCIPDICRESALSLWKLI 359


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 70  PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 195
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 212 ISQNSASNTRSQPLPSCEESVDRC*TQ*KMDRKSMGP 322
           + QN+ + T S PL S +ESV++  ++ +    S+ P
Sbjct: 79  LHQNATAPTSSTPLQSPDESVNKLNSEDEEGNSSVAP 115


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 176 PLPGPSTSARVWSITSTTLTNFPFKG 99
           P+PG +T     ++ S T  N+P+ G
Sbjct: 51  PVPGTTTIYPTSNVASNTSENYPYTG 76


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 381 TAARVKRNRARTAVFKSLKVKAARAGTFGKKNIP 482
           T     +NR  T+ F     + A AG FG+   P
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,523
Number of Sequences: 5004
Number of extensions: 42872
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)