Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0001
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    60   1e-09
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    58   5e-09
03_05_0161 + 21400580-21401695                                         30   1.4  
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531...    28   5.6  
04_04_0387 + 24869594-24871480                                         27   7.4  
03_06_0281 + 32824059-32824568                                         27   7.4  
10_08_0383 - 17424194-17425567                                         27   9.8  
05_07_0031 - 27183252-27183317,27183542-27184282                       27   9.8  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +1

Query: 46  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 225
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 226 RL 231
           ++
Sbjct: 59  KI 60



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +3

Query: 267 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 446
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 447 A 449
           A
Sbjct: 133 A 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +1

Query: 49  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 228
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 229 L 231
           +
Sbjct: 73  I 73



 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +3

Query: 267 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 398
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 209 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 114
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>06_03_1070 -
           27351781-27351882,27352461-27352520,27353033-27353142,
           27353583-27353693,27353781-27353939,27354035-27354158,
           27354755-27354812,27356656-27356933
          Length = 333

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 195 PLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQ 314
           PL+P P     P   V    R VRK +T  K  E WTE +
Sbjct: 45  PLQP-PMAVPAPAAAVGEEARKVRKPYTITKSRESWTEPE 83


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 291 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 470
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 471 K 473
           K
Sbjct: 557 K 557


>03_06_0281 + 32824059-32824568
          Length = 169

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 266 PHKTVGAVNAYLRRNFVRWSWFKRICCLG 180
           P+++V ++ A++R   +   WF+ IC  G
Sbjct: 34  PYESVDSLRAFIRDTVLPHPWFRAICLAG 62


>10_08_0383 - 17424194-17425567
          Length = 457

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 ATDPLKPTPSHKIPPQIRVHSPYRLVRKA 272
           A DP  PTP    PP + + +  R++R+A
Sbjct: 4   AADPAPPTPPPPPPPSLDLRTGGRILRRA 32


>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 182 GTPLPGPSTSARVWSITSTTLTNFPFKGPSATRATRPGSTYRAKG 48
           G P P P T A     T   +   P  G +ATR  R  S++R  G
Sbjct: 24  GQPPPPPPTPAHRLPPTVLPVVALPAGGDAATRDRRRSSSHRRGG 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,495,773
Number of Sequences: 37544
Number of extensions: 301895
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)