Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0001
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.13
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.13
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.23
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 3.8
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 28 5.0
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin... 27 8.8
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +1
Query: 46 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 225
M F R V+ GRV +A G +GKL ++V+VID R +DGP S V R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 226 RLK 234
LK
Sbjct: 61 VLK 63
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +3
Query: 198 LKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 377
LK K ++RV + V+ A+ AK+ E + ++QWA+K+A + RA++TD++R+K
Sbjct: 52 LKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYK 111
Query: 378 LTAARVKRNRARTAVFKSLK 437
L A+ RNR LK
Sbjct: 112 LMKAKQMRNRIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 282 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 461
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 462 FGKKNIP 482
KK+ P
Sbjct: 186 -AKKSAP 191
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 282 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 461
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 462 FGKKNIP 482
KK+ P
Sbjct: 186 -AKKSAP 191
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 306 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 452
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -3
Query: 482 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 369
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 245 QPLPSCEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 424
+P+ + D C + K + +++ Q+E TN L+ V T + C DCR
Sbjct: 85 KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144
Query: 425 QELEGEGCACWYLRQ 469
E + AC +RQ
Sbjct: 145 AEAKDFWRACVQVRQ 159
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 291 NEKWTESQWAQKLANKEKRAQMTDYDRFK 377
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 167 GPSTSARV---WSITSTTLTNFPFKGPSATRATRPGS 66
GPSTS+ V S+ +TT PF P++ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin
protein 5 protein.
Length = 458
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 228 PQIRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 374
P+ R H R+ +K D + NE ++ LAN+ + + D+DRF
Sbjct: 214 PERRGHCKTRICKKT-NDPEFNEMFSFDVSFNNLANRMLQFTVYDFDRF 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,630
Number of Sequences: 27780
Number of extensions: 255092
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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