Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf2496
         (1046 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    27   4.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.7  

>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 287 HRSPRSKWASTRVSRFECETRLVKSHCLEPPD-SRGSTVSIXLPDSA 150
           H  P  +WA  R  R   E+    SH +  P+ S  ST S  +  S+
Sbjct: 112 HIGPNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSS 158


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 235 HSKRETRVEAHLDRGDRCYRFFS 303
           H KRE   E H ++ +RC+ +FS
Sbjct: 243 HFKREMGSELHREQFERCFAYFS 265


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 630 YNIYXFXEPXYIQNTNFAKTHINAPXHRTXXGHXTXSACPCQNPAKPRVLXEXNT 794
           + I  + E  Y +NT F KTHI+         H     C C +   PR +    T
Sbjct: 144 HTISEYFEDDYFKNTYFDKTHID---------HKCKEHCSCHHDKFPRPVPHNGT 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,491
Number of Sequences: 5004
Number of extensions: 51627
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)