Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf2496
         (1046 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    29   4.6  
02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199...    29   6.1  
06_03_1200 - 28352647-28352712,28353097-28353216,28353314-283534...    29   8.1  

>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   PVPSLXACRXTLEDPPDXXFMHSAERPV 91
           PVP+  A R  L+DPPD  +M S+   +
Sbjct: 461 PVPAAAASRQLLDDPPDRRWMASSSADI 488


>02_01_0298 +
           1998278-1998655,1998836-1999111,1999203-1999271,
           1999881-2000073,2000161-2000555
          Length = 436

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +1

Query: 136 AEASLAESGKXMLTVEPRESGGSKQCDFTSRVSHSKRETRVEAHLDRGDRCYRFFS*HVH 315
           A A  A +GK       R+  GSK+    +   H KR TR  A  D G   YR  S H  
Sbjct: 35  AVACRAAAGKGTSKARARDKDGSKRQQRRALEEHLKRRTRSGAAFDAG--LYRRHS-HAE 91

Query: 316 H 318
           H
Sbjct: 92  H 92


>06_03_1200 -
           28352647-28352712,28353097-28353216,28353314-28353466,
           28354652-28354804,28354890-28354967
          Length = 189

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 281 SPRSKWASTRVSRFECETRLVKSH 210
           +P S+W +T+V+ + CE  L   H
Sbjct: 119 APGSRWVATKVTGYRCELELTADH 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,628,580
Number of Sequences: 37544
Number of extensions: 407203
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3094456940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)