Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1136
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   1.6  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   2.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   2.9  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   5.0  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   5.0  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   5.0  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   5.0  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   6.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.7  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.8  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   8.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.8  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 213 GLWFNRGWRTLTSWRGCS 266
           GLW N G+ T  SW  C+
Sbjct: 334 GLWLNEGFATWMSWFSCN 351


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 163 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 38
           ++IFL P    +G+    +D W+ F+    E DW       G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 387 DKLYFDGVKITDVKVDKLTTFFENFEFD 304
           D+L FD +K   + V  L  F  +FEFD
Sbjct: 283 DRLSFDNIKPALICVGHLLQFCSSFEFD 310


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 217 SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 119
           S F V++ VD +VAS   +    AP   DN  P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 26  RIADNLVLTSGEFSCEPV 79
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 319 LEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 492
           LE+CC   DFN    D +  K V    LQ L++L  V   ++ E +   I     V V
Sbjct: 126 LEQCCVVFDFNDPSTD-LYGKEVKREALQDLIDLISVRKEAIDESLYPSIVHMFAVNV 182


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 119 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 211
           R ++V+V G  + FD  +T  +  ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 VFGSQEDFDNSVTGDIRINLN 199
           VF  +ED  NS+T D   NLN
Sbjct: 255 VFQEEEDAGNSMTEDSNFNLN 275


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 91  FFELDWFTTKLTAGQNKIIRNS 26
           F  LDWFT   +  QN+++R S
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRS 675


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 363 KITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHA 253
           K   + + +L  FF  ++ DAS+  + S    KNN++
Sbjct: 367 KAQKINIGQLNRFFSEYDLDASD--FLSSSVHKNNNS 401


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 450 LYNRIVEYIVEFKQYLKPYTQDKLYFD 370
           LYNR    I + KQ LK   +D LY D
Sbjct: 489 LYNRWDSSIPDLKQNLKVTREDILYVD 515


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 298 AGVEFKVLEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVELIESRITKR 477
           A V   + +E  Q I F I   +T++   VLS  L +L  L++ F + V ++  S     
Sbjct: 133 AAVSQSIKKEGTQVIVFGI---ETVR-SMVLSFPLIILSTLDENFLSEVAQVFSSLNLLP 188

Query: 478 SLVKVHCTRHEV 513
            L ++ CT  E+
Sbjct: 189 ELSRMGCTYGEL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,285
Number of Sequences: 5004
Number of extensions: 36673
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)