Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1136
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     29   2.9  
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435...    28   5.1  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    27   8.8  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 5   FKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL*C 115
           +K +KF R  DNL+L   +      QL  FH + L C
Sbjct: 58  WKVEKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNC 94


>06_01_0604 -
           4358278-4358442,4358835-4358943,4359236-4359331,
           4359823-4359956,4360639-4360905,4361225-4361310,
           4361409-4361501,4361601-4361696,4361986-4362093,
           4362473-4362493,4363856-4364156
          Length = 491

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 216 LWFNRGWRTLTSWRGCS 266
           LW N G   +TSW GCS
Sbjct: 96  LWLNGGQSIVTSWPGCS 112


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 229 VAGAP*RHGVVVLNLLFTKVHAVAGVEFKVLEECCQFIDFNISYLDTIKVKFV-LSVRLQ 405
           +AGA     V VLN L TK+ A+   E+K+L+   + I F  + L +I V    LS +  
Sbjct: 1   MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNELSSISVLLEHLSTKED 60

Query: 406 VLLELNDVFHNSVVEL 453
            L      + N+++EL
Sbjct: 61  KLDGPTKEWRNNMLEL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,775
Number of Sequences: 37544
Number of extensions: 215448
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)