Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1136
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   2.4  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   3.2  
At3g59180.1 68416.m06598 hypothetical protein contains a novel d...    27   5.6  
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    27   5.6  
At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A...    27   5.6  
At2g33350.1 68415.m04088 hypothetical protein                          27   5.6  
At3g29770.1 68416.m03774 hydrolase, alpha/beta fold family prote...    27   7.4  
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    27   9.8  
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    27   9.8  
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    27   9.8  
At3g05680.1 68416.m00634 expressed protein                             27   9.8  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    27   9.8  
At2g30550.2 68415.m03721 lipase class 3 family protein similar t...    27   9.8  
At2g30550.1 68415.m03720 lipase class 3 family protein similar t...    27   9.8  

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 273 PLY*STRCCWRRIQSSRRMLSIYR 344
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 134 IVFGSQEDFDNSVTGDIRINLNV 202
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At3g59180.1 68416.m06598 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 475

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 217 CGSIVAGAP*RHGVVVLNLLF--TKVHAVAGVEFKVLEECCQFIDFN 351
           C  +++G P    +V++NL++    V +V+    K +  C + ID+N
Sbjct: 148 CAKLISGCPVLEELVMINLMWGLMDVCSVSNPTLKRVTICSEIIDYN 194


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 211 FNVNIEVDSNVASDAVVKIFLAPKYDDNGI 122
           F V   VDSN+A D+  K  LAP  +  GI
Sbjct: 14  FGVISSVDSNIAYDSTGKYVLAPALEKVGI 43


>At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B' (B'beta) identical to B'
           regulatory subunit of PP2A [Arabidopsis thaliana]
           GI:2160692; similar to SWISS-PROT:Q28653
           serine/threonine protein phosphatase 2A, 56 kDa
           regulatory subunit, delta isoform (PP2A, B subunit, B'
           delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
           B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
           isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
           cuniculus]; contains Pfam domain, PF01603: Protein
           phosphatase 2A regulatory B subunit (B56 family)
          Length = 499

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 LEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVELIES 462
           L+ CC   DF     DTIK      ++ Q LLEL D   +   ++ ES
Sbjct: 91  LQNCCFLFDFT----DTIKNARDKEIKRQTLLELVDFIQSGSSKISES 134


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 IVFGSQEDFDNSVTGDI 184
           I+F SQEDF+N +T  I
Sbjct: 127 IIFDSQEDFENDITASI 143


>At3g29770.1 68416.m03774 hydrolase, alpha/beta fold family protein
           similar to SP|Q40708 PIR7A protein {Oryza sativa},
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile: PF00561 alpha/beta
           hydrolase fold
          Length = 390

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 265 EQPRHDVKVRQPRLNHSPFNVNIE-VDSNVASDAVVKIFLAPKYDDNGIPLTLEDN 101
           + P  DV +    +   PF   +E +  + A+   V+ +     +DN IP+TL++N
Sbjct: 294 QSPSKDVALASVSMRSIPFAPVLEKLSLSDANYGSVRRYYIETLEDNAIPVTLQEN 349


>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 91  FFELDWFTTKLTAGQNKI 38
           FFE+DWFT  L   +N +
Sbjct: 247 FFEVDWFTEYLNKAENSL 264


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 91  FFELDWFTTKLTAGQNKI 38
           FFE+DWFT  L   +N +
Sbjct: 247 FFEVDWFTEYLNKAENSL 264


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 91  FFELDWFTTKLTAGQNKI 38
           FFE+DWFT  L   +N +
Sbjct: 112 FFEVDWFTEYLNKAENSL 129


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 375 FDGVKITDVKVDKLTTFFENFEFDASNSVY 286
           F+GV ++D  + +LTT        + NSVY
Sbjct: 798 FEGVNLSDSSISQLTTALRILALISDNSVY 827


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 480 TSLRDPAFYQLYNRIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKV 343
           ++L  P F+ + N  +  +     YLKP+T + +     + TDV +
Sbjct: 229 SALNQPLFFTVANHKLTVVGADASYLKPFTTNVIVLGPGQTTDVLI 274


>At2g30550.2 68415.m03721 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 529

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 435 VEYIVEFKQYLKPYTQDKL 379
           +E+I + K YLKP T++K+
Sbjct: 238 LEWIADLKDYLKPVTENKI 256


>At2g30550.1 68415.m03720 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 464

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 435 VEYIVEFKQYLKPYTQDKL 379
           +E+I + K YLKP T++K+
Sbjct: 238 LEWIADLKDYLKPVTENKI 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,400
Number of Sequences: 28952
Number of extensions: 182724
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)