Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1128
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.48 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.0  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   6.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.9  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   7.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 351 RMSRSKFKPDLKTRTGTSHSSILAQWTTTNS 443
           R S +  KP L   TG++ S  +A  T TNS
Sbjct: 183 RDSPNYIKPQLHVSTGSTSSPTIASATYTNS 213


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 537 VLLILYSVFYNSSRKTLFFVTVPLKIVN*ARMSLLSSIV 421
           VLL+++ V +     T+FF T  ++      MSLL+ I+
Sbjct: 526 VLLLMFGVSFVVIVITIFFFTANVQAGELYFMSLLNPIL 564


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 537 VLLILYSVFYNSSRKTLFFVTVPLKIVN*ARMSLLSSIV 421
           VLL+++ V +     T+FF T  ++      MSLL+ I+
Sbjct: 251 VLLLMFGVSFVVIVITIFFFTANVQAGELYFMSLLNPIL 289


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 71  SFFCRIFLYVYENGRFVPCRL 9
           S +CR+F  + E   F P R+
Sbjct: 279 SEYCRVFKMLQEEDIFTPDRI 299


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 339 PDSWRMSRSKFKPD 380
           PD W+   +K+ PD
Sbjct: 100 PDYWKALEAKYDPD 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,632
Number of Sequences: 336
Number of extensions: 2839
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)