Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1128
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.4 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 259 HHDSGLNVTWLGHCCSILLHHGVQYL 336
           H +SGL  TWLGH   ++   GV+++
Sbjct: 79  HSESGLFATWLGHATVLVDLEGVKFV 104


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 68  FFCRIFLYVYENGRFVPC 15
           F CR F+ VY NG FV C
Sbjct: 641 FMCRPFVDVYNNGGFVMC 658


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,031
Number of Sequences: 27780
Number of extensions: 256124
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)