Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1128
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    27   7.2  
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    27   7.2  
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ...    27   7.2  

>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
 Frame = -2

Query: 394 VLVFRS-GLNLLRLI--LQLSG----VGIVHRDEVRCYSNVQAM*H*GRSRDGHVR 248
           +++FRS GL  L ++  +Q SG    +GI+ R ++R Y+ +QA  H  + + G  R
Sbjct: 720 LVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHKSGKAR 775


>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 259 HHDSGLNVTWLGHCCSILLHHGVQYL 336
           +HDS +N  +LG CC + L   + +L
Sbjct: 187 NHDSLVNHNYLGRCCRVSLKGNIYWL 212


>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
           contains Pfam profile PF01753: MYND finger
          Length = 387

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 138 CIRQVSSRPIQCLSSNLTLNGRFVLLSNIF 49
           CI+ ++ +P   LSS ++LN RF++L N F
Sbjct: 337 CIKTITGQP---LSSPVSLNYRFIVLFNYF 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,348
Number of Sequences: 28952
Number of extensions: 224705
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)