Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1120
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 1.8
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 27 1.8
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 27 2.4
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 2.4
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 2.4
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 2.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.4
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 2.4
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 5.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 5.6
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 5.6
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 25 7.4
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 9.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.8
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 322 WQKFLMIGPIMNQIMLEVTKIVS*CILMEASPMLIALIRSSTFAIRKRLQLLL 480
W KF ++N + + ++ V+ I ++ P LIA I +S+ ++RK + LL
Sbjct: 1712 WFKFGNNSNVINTLNVGIST-VNIDIWLDVIPQLIARIHASSLSVRKSVHQLL 1763
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 333 PHDWADYEPDNAGGDENCILMYPDGSFADVN 425
PH W DYE ++ +NC L + ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 386 TIFVTSSIIWFIIGP 342
T+F SS+IW +IGP
Sbjct: 617 TVFFNSSVIWGVIGP 631
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 348 DYEPDNAGGDENCILMYPDGSFADVNCTD 434
+Y PD+ N +L YPDG + + N D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 77 RNCWPTTEQIRINP 36
RNCWP T + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 77 RNCWPTTEQIRINP 36
RNCWP T + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 79 YDYTYFRNINGWLKLQEIPAIWQEARLRCHLEGSVLASPLDAALKSSMLSLITN--KKSS 252
Y +T+ +N+N K E+P +QE L+ +AS L + + I + K SS
Sbjct: 9 YYFTHEKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSS 68
Query: 253 WASTLVFMRYSREETSV 303
A+ Y+R SV
Sbjct: 69 KATRPYIPSYTRLTYSV 85
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 77 RNCWPTTEQIRINP 36
RNCWP T + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 142 WQEARLRCHLEGSVLASPLDAALKSSMLSLITN 240
W++ L H+ + L S + +L SS+L+ ITN
Sbjct: 614 WRKYHLLAHMMTANLPSQIQTSLNSSILNPITN 646
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 37 GLILICSVVGQQFRYDYTYFRNING 111
G++ + ++V Q RY Y FR+++G
Sbjct: 412 GIVTLDTIVNQLIRYYYRGFRHLSG 436
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 37 GLILICSVVGQQFRYDYTYFRNING 111
G++ + ++V Q RY Y FR+++G
Sbjct: 412 GIVTLDTIVNQLIRYYYRGFRHLSG 436
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 253 TNSSYLLSKTACCF-LKQRPEVKPIQILPNDIL 158
T+++ L+K A +KQRPEV I I+ ++L
Sbjct: 627 TSATEFLAKVATFLPIKQRPEVSKISIVDENLL 659
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 97 RNINGWLKLQEIPAIWQEARLRCHLEGSVLASPLDAALKSSMLSLITNKKSSWASTLVFM 276
R+ +L++QE ++ R L A+ D ++S+L +TN+ + A ++ F+
Sbjct: 90 RDAQNFLEMQEANSLDNSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFI 149
Query: 277 RYSREETSVQ 306
+TS++
Sbjct: 150 NQILRKTSIR 159
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 402 DGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSDILS 518
D ++A+ C D Y+ YK T + VD ILS
Sbjct: 121 DDAYAE-KCNDKVMYIDYKNITKVIQPGRIIYVDDGILS 158
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 384 CILMYPDGSFADVNCTDTFQY 446
C+++ D SF D CTD Y
Sbjct: 613 CLIVSHDSSFLDHVCTDIIHY 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,783
Number of Sequences: 5004
Number of extensions: 47345
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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