Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1120
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    31   0.61 
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998...    29   1.9  
10_08_0100 + 14788426-14789097                                         29   3.3  
02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333     29   3.3  
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784...    28   4.3  

>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 303 SIEGVLLAKIPHDWADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAM 482
           SI G  L   P D+ D EPD      + I+     +  D  C    + +C++KK  TV  
Sbjct: 347 SIYGKQLMIDPQDFQDAEPDILANSASEIINRIKEN--DDQCAMALRSLCHRKKGLTVEE 404

Query: 483 SSCGSVDS 506
           +S  S+DS
Sbjct: 405 ASLISIDS 412


>03_03_0040 -
           13999040-13999179,13999524-13999638,13999759-13999818,
           14000007-14000060,14000274-14000333,14000418-14000480,
           14000552-14000595,14000671-14000755,14000904-14001028,
           14001368-14001432,14001460-14001518,14001678-14001743,
           14001870-14001935,14002019-14002105,14002168-14002257,
           14002378-14002440,14003153-14003419
          Length = 502

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 132 SSYLARGSIKMSFGRICIGFTSG 200
           S +LA+G I + FGRI +GF++G
Sbjct: 164 SLHLAKGVIMLYFGRILLGFSTG 186


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 357 PDNAGGDENCILMYPDGSFADVNCTDTFQY 446
           P  AGG E C+  YP+G  A     D  Q+
Sbjct: 53  PFTAGGHEWCVDFYPNGKLAAAGDADMIQF 82


>02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333
          Length = 588

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 52  CSVVGQQFRYDYTYFRNINGWLK--LQEIPAI 141
           C+ +G   ++   Y   ++GWLK  LQE PA+
Sbjct: 371 CAALGHLAKHQRDYVHALHGWLKLTLQEAPAV 402


>01_05_0297 -
           20578031-20578080,20578162-20578236,20578317-20578416,
           20578476-20578535,20578833-20578907,20578989-20579069,
           20579596-20579665,20579769-20579833,20580008-20580116,
           20580812-20580876,20580964-20581023,20582008-20582134,
           20582215-20582315,20583209-20583316,20583429-20583464,
           20583569-20583714,20585555-20585564
          Length = 445

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 157 LRCHLEGSVLASPLDAALKSSMLSLITNKKSSWASTLVFMRYSREETSVQLKEFYWQK 330
           L+CH+   V  + L   LK  + S +     S   T +   Y+RE  +VQ   F+W++
Sbjct: 237 LKCHISHDV--NHLHEGLKHGLKSELEKASPSLGRTAL---YTREYLTVQFVRFFWKR 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,105
Number of Sequences: 37544
Number of extensions: 285957
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)