Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1120
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 37 0.010
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05) 36 0.022
SB_56272| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_243| Best HMM Match : Lectin_C (HMM E-Value=1.8e-19) 34 0.089
SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06) 33 0.12
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0) 32 0.27
SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13) 31 0.83
SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_46349| Best HMM Match : Lectin_C (HMM E-Value=3.2e-06) 29 2.5
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 4.4
SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024) 28 4.4
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 28 5.8
SB_50656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 27 7.7
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +3
Query: 258 IYTGIHALFSRGDFRSIEGVLLAKIPHDWADYEPDNAGGDENCILMY------PDGSFAD 419
++TG++ +G + +G + + DW EP G E CI M P GS AD
Sbjct: 180 LWTGLNDRIKKGMYSYTDGSSVEYL--DWIPGEPSQKG--EQCIGMRLKDSLNPYGSMAD 235
Query: 420 VNCTDTFQYVCYK 458
+NC Q+VC K
Sbjct: 236 LNCKQKHQFVCRK 248
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 342 WADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSV 500
W EPD+ G + C+++ G + DV C T Y+C K+T + G V
Sbjct: 1395 WGPAEPDSHSGQQPCVVLKSTGYWGDVGCYATRPYMC--KRTRPPGVCDAGWV 1445
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +3
Query: 339 DWADYEPDNAGGDE-NCILMYP-----DGSFADVNCTDTFQYVCYKKK 464
+W YEP G D +C+ + P G + V+CT T YVC K +
Sbjct: 347 NWGQYEPSKYGSDSRDCVSLIPWTPFGSGDWGTVSCTTTNAYVCKKTR 394
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCI-LMYPDGSFADVNCTDTFQYVC 452
+W EP+N +E+C L+Y DG + D +C+ + ++C
Sbjct: 75 NWRRGEPNNFQDNEDCTELLYQDGLWNDDDCSKEYSFIC 113
Score = 32.3 bits (70), Expect = 0.27
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 258 IYTGIHALFSRGDFRSIEGVLLAKIPHDWADYEPDNAGGDENCILMYP-DGSFADVNCTD 434
++ G++ L + G +G ++ I +W + EP+N G E+C M DG + D NC
Sbjct: 1504 VWIGLNDLGTEGVNTWSDGSPMSYI--NWGNKEPNNWNGMEDCGEMSRFDGRWNDQNCNL 1561
Query: 435 TFQYVCYKKKTSTV 476
+VC +K +T+
Sbjct: 1562 KRTFVC-RKHNNTI 1574
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 342 WADYEPDNAGGDENCILMYPD--GSFADVNCTDTFQ-YVCYK 458
W EP++ E+CI MY G F + + DT + YVC K
Sbjct: 210 WYSGEPNDHASVEDCISMYSGSLGGFWNDDYCDTLRAYVCEK 251
>SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05)
Length = 131
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 306 IEGVLLAKIPHD-WADYEPDNAGGDENCILMYPDGSFA----DVNCTDTFQY--VCYKK 461
++G L + W +PDN+GG ENC G A D++C +++Q+ C KK
Sbjct: 71 VDGTTLTSSSYSAWYPPQPDNSGGHENCGHFLLSGKLARRWNDISCNNSYQFAIACQKK 129
>SB_56272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMY-PDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDS 506
+W EP+N G E C+ +Y G + DV C++ +C + T S S+ S
Sbjct: 35 NWNSGEPNNYEGQEKCVELYVRSGLWNDVKCSNLRPSICKRGYTLRSPQSMIASISS 91
>SB_243| Best HMM Match : Lectin_C (HMM E-Value=1.8e-19)
Length = 135
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMYPDGSF--ADVNCTDTFQYVCYKKKT 467
DW +P + +ENC+ ++ SF D++C D+ ++C K T
Sbjct: 90 DWGLSDPSGST-NENCVALHSSSSFKFVDISCADSLGHICKKTVT 133
>SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06)
Length = 155
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMY---PD--GSFADVNCTDTFQYVCYK 458
+WA EP+N G +++C+ +Y P G + D CT + +CYK
Sbjct: 6 NWAAREPNNRGSNQDCVEIYIKRPSEAGKWNDEPCTKKKKALCYK 50
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMYPD----GSFADVNCTDTFQYVCYKKK 464
+W +Y+PDN E+C Y G + D++C Y+C + K
Sbjct: 1600 NWWNYQPDNWINSEDCAHTYHQTSAMGRWNDISCYTNMAYICKRDK 1645
>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 577
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 342 WADYEPDNAGGDENCILMYPD-GSFADVNCTDTFQYVCYKKKTS 470
W +P++ G +NC+ + GS+ DVNC Y+C K S
Sbjct: 385 WLYGQPNDHWGRDNCVAVQTRMGSWNDVNCMQRRGYICKAKLAS 428
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 142 WQEARLRCHLEGSVLASPLDAALKSSMLSLITNKKSSWAST 264
W +ARLRC EG L S L K ++ + W T
Sbjct: 321 WPQARLRCQREGGDLVSILSQQEKDFLIYQMKTVNGIWIWT 361
>SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)
Length = 405
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 423 NCTDTFQYVCYKKKTSTVAMSSCGSVDSDILSAKRREI 536
+C ++ +VC+ KT T G VDS I++ RR+I
Sbjct: 241 DCGNSGSWVCFLCKTKTPGRKKKGHVDSPIVTPPRRKI 278
>SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 336 HDWADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVC 452
+D DY+ D+ ++ I +Y D DV+ D +Y C
Sbjct: 205 YDDGDYDDDDDDANDEMIFIYADEIHVDVDANDDDKYYC 243
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 WADYEPDNAGGDENCI-LMYPDGSFADVNCTDTFQYVC 452
WA +P + G D++C L+ ++ D +C +++ +VC
Sbjct: 1618 WAFNKPSDNGKDKDCTYLLKQSKTWIDFSCANSYPFVC 1655
>SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 282 FSRGDFRSIEGVLLAKIPHDWADYEPDNAGGDENCILMYPDGSFADVNCTD 434
F +G I ++ + W DYEP +G + +M P + D+N T+
Sbjct: 322 FLKGAMGDITQRDVSIVKSKWVDYEPIQSGTNPIEFVMKPLADYIDINTTE 372
>SB_46349| Best HMM Match : Lectin_C (HMM E-Value=3.2e-06)
Length = 76
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 261 YTGIHALFSRGDFRSIEGVLLAKIPHDWADYEPDNAGGDENCILMYPDGSFADVNCTDTF 440
+ G + S G+F ++G + +W EP+N ++ ++ G + D C++T+
Sbjct: 10 WIGFNDRGSEGNFSWVDGSNSSF--KNWRKGEPNNWQNEDCAEAVWNTGQWNDELCSNTY 67
Query: 441 QYVC 452
Y+C
Sbjct: 68 GYIC 71
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 100 NINGWLKLQEIPAIWQEARLRCHLEGSVLASPLDAALKSSMLSLITNKKSSW 255
++ G K E W EA C L+ LAS L + +M+S + +K W
Sbjct: 1471 SVRGCYKFVEDKKSWDEASSACQLDDGRLASILSDD-EQTMISQVYSKADMW 1521
>SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024)
Length = 172
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVD 503
D +D+ D+ D++ I++ + T T V +KK TS++ GSVD
Sbjct: 31 DDSDFGVDDDDNDDDMIILITEAPVHSETYTITNYTVMFKKATSSLNYLLAGSVD 85
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 375 HLQHYLVHNRPNHEEFLPVELLQLNGSLLSRITHEYQCRC 256
H+ +VH+ P+H PV NG + + + Y+C C
Sbjct: 8 HIHRLIVHHHPDHSFCEPVPC--QNGGQCTVVPNGYECTC 45
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILM-YPDGSFADVNCTDTFQYVC 452
++A + D +G + C+ M DG + D +C Y+C
Sbjct: 289 NFASGQHDRSGRSKACVYMRQTDGKWVDDDCDQKMNYIC 327
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 339 DWADYEPDNAGGDENCILMYPD---GSFADVNCTDTFQYVCYK 458
+W EP G +NC+ + G+F D CT+ +++C K
Sbjct: 227 NWKTGEPQGKG--QNCVALDFSSTLGTFFDKKCTEKHEFICKK 267
>SB_50656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 75 SI*LYVLQEYQRVVEASGDSSYLARGSIKMSFGRICIGFTSGRCFKKQHAVFD 233
S+ LY + + R+ + G S+ A+ + + + R C G G C K+H +F+
Sbjct: 236 SLKLYYMNKSVRIGQREGVSAIDAK-QMDLLYKRQCSGGGDGGCMYKKHLLFN 287
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 426 N*HRRSFHQDTSGYNFRHLQHYLVHNRPNH 337
N HRR H ++ H H H+ PNH
Sbjct: 195 NRHRRHHHHHRHRHHHHHPNHPYSHHYPNH 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,616,063
Number of Sequences: 59808
Number of extensions: 345334
Number of successful extensions: 857
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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