Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1120
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 208 LKSSMLSLITNKKSSWASTLVFMRYSREETS 300
           LKS +  ++   ++ ++  L+ MR+ +EE S
Sbjct: 617 LKSGLYHVLRGNENIYSGKLISMRHLKEEVS 647


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 390  LMYPDGSFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSDILSAKR 527
            L Y   S  D++       + YK+  +T  +   GSV+   +S  R
Sbjct: 1200 LRYAIPSAGDISIESKSSPLVYKRNINTYTLDGVGSVEKTGVSTLR 1245


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 510 YHCLHCHRK 484
           YHC HC R+
Sbjct: 38  YHCSHCDRQ 46


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +1

Query: 292 ETSVQLKEFYWQKFLMIGPIMNQI 363
           ET      FY+  F   GP+  ++
Sbjct: 283 ETLANFMRFYYNPFTPFGPVTEKV 306


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  VFGLILICSVVGQQFRYDYTYFRNINGWL 117
           VF   +I  V  +   Y+Y ++ ++ GWL
Sbjct: 506 VFTFNIIKFVPVKYLTYEYPWWSHVLGWL 534


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  VFGLILICSVVGQQFRYDYTYFRNINGWL 117
           VF   +I  V  +   Y+Y ++ ++ GWL
Sbjct: 559 VFTFNIIKFVPVKYLTYEYPWWSHVLGWL 587


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +1

Query: 292 ETSVQLKEFYWQKFLMIGPIMNQI 363
           ET      FY+  F   GP+  ++
Sbjct: 283 ETLANFMRFYYNPFTPFGPVTEKV 306


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 381 NCILMYPDGSFADVNCTDTFQYV 449
           N I    +G F +VN  DT++ V
Sbjct: 903 NYIEAVKEGKFMNVNMLDTYESV 925


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,724
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)