Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1120
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr...    29   2.1  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   3.6  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    28   4.8  
At4g03000.2 68417.m00408 expressed protein contains similarity t...    28   4.8  
At4g03000.1 68417.m00407 expressed protein contains similarity t...    28   4.8  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   4.8  
At2g48110.1 68415.m06022 expressed protein                             27   6.3  
At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containi...    27   8.3  

>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 483

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +1

Query: 208 LKSSMLSLITNKKSSWASTLVFMRYSREETSVQLKEFYWQ-KFLMIGPIMNQIMLEVTKI 384
           LK  +L L+ ++ ++ +S  + +   R E  V  KE  W    +  G I ++ M+  T++
Sbjct: 293 LKGGILQLLIDRLATSSSLQLLIPCLRSEHRVLKKEAAWVLSNIAAGSIEHKRMIHSTEV 352

Query: 385 VS*CILMEASPMLIALIRSSTFAIRKRLQLLL 480
           +         P+L+ ++ +S F IRK +  +L
Sbjct: 353 M---------PLLLRILSTSPFDIRKEVAYVL 375


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 504 CLHCHRKT*QQLKSFSYSKRTGTYQCN*HRRSFHQDTSGYNFRHLQHYLVHNR 346
           C H HR       SF+ S  +G + C   R+    +   Y      HY VH R
Sbjct: 289 CRHQHRI------SFTSSLPSGKWSCGVCRKKVDNNCGAYTCNKCSHYFVHTR 335


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 504 CLHCHRKT*QQLKSFSYSKRTGTYQCN*HRRSFHQDTSGYNFRHLQHYLVHNR 346
           C H HR       SF  S  +G + C   R+  + +   Y     +HY VH R
Sbjct: 289 CRHQHRI------SFISSLPSGKWSCGVCRQKVNNNCGAYTCNKCRHYFVHTR 335


>At4g03000.2 68417.m00408 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 106 NGWLKLQEIPAIWQEARLRCHLEGSVLASPLDAALKSSM 222
           NG LK +E  ++  +    CHLEG +L+S L    +S+M
Sbjct: 73  NGQLKAEESDSVGWDDPFACHLEG-LLSSNLLTLFRSAM 110


>At4g03000.1 68417.m00407 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 106 NGWLKLQEIPAIWQEARLRCHLEGSVLASPLDAALKSSM 222
           NG LK +E  ++  +    CHLEG +L+S L    +S+M
Sbjct: 73  NGQLKAEESDSVGWDDPFACHLEG-LLSSNLLTLFRSAM 110


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 504 CLHCHRKT*QQLKSFSYSKRTGTYQCN*HRRSFHQDTSGYNFRHLQHYLVHNR 346
           C H HR       SF+ S  +G + C   R+    +   Y      HY VH R
Sbjct: 291 CRHHHRI------SFTSSLPSGKWSCGVCRQKVDNNCGAYTCNKCNHYFVHTR 337


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 178 SVLASPLDAAL-KSSMLSLITNKKSSWASTLVFMRYSREETSVQLKE 315
           S++   LDA+L +  +L L +NK+S W S+   M     E SV+  E
Sbjct: 162 SIVWELLDASLDEEGLLELTSNKRSKWPSSPHDMDLDGLENSVKRNE 208


>At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 741

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +1

Query: 121 LQEIPAIWQEARLRCHLEGSVLASPLDAALKSSMLSLITN----KKSSWASTLVFMRYSR 288
           LQE+   W+E  LR H E   +A  L +    + L+++ N    +    A+ L+   Y R
Sbjct: 658 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 717

Query: 289 E 291
           E
Sbjct: 718 E 718


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,271
Number of Sequences: 28952
Number of extensions: 239267
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)