Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.3  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.0  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   6.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   9.1  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 312 HRENITQIKF*IMYHLIISPIINMSS 235
           HR N + I + +MY+LII+P + ++S
Sbjct: 314 HRRNASSIIYTLMYYLIIAPTLLITS 339


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 47   GCDDNV--SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKI 217
            GC D +  ++VK    I   +K      L FDK I     +   + F L+ K   EYK+
Sbjct: 1188 GCVDTLIQTIVKQIAQILSKQKKGASKGLPFDKSILDNHSAELNDAFNLFLKAAVEYKV 1246


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 382 KMSQNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSDPK*KINVD 525
           K  QN+  RQI   +N+  + P   P++F F M +S + +P    N+D
Sbjct: 45  KRFQNYTKRQIC--YNV--ASPNEPPIDFSFLMHKSTDENPDTPSNLD 88


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +2

Query: 53  DDNVSVVKLNKSIYGL-KKSPKYWNL----KFDKVIAKKGFSRSENDFCLYCKV 199
           DD++  VK N+  YGL  K   Y +L      D V+A+ G   ++N+ C YC V
Sbjct: 98  DDSLDTVKRNQQQYGLPMKIVSYADLYDGWTMDNVVARIG---TKNN-CTYCGV 147


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 430 MCESKPMSTPMEFKFQMFQSNNSDPK*KINVDKF 531
           MC+   ++  MEF  + FQ  ++D   K++ ++F
Sbjct: 322 MCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,419
Number of Sequences: 5004
Number of extensions: 50366
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)