Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1110
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 75 4e-14
04_01_0630 - 8354628-8355803,8355837-8355926 58 8e-09
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 57 1e-08
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 55 4e-08
09_02_0336 - 7397745-7398308,7398813-7400723 50 1e-06
03_02_0868 + 11937652-11937757,11938097-11938671 50 1e-06
04_03_0631 - 18190195-18190686,18190866-18191066 45 4e-05
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 41 7e-04
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430... 29 2.3
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 28 5.4
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 7.1
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 75.4 bits (177), Expect = 4e-14
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Frame = +2
Query: 2 LYGDIQEDVYMRLP-----PGCDDNVSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSR 166
L+G++++++YM P PG +D V KL +S+YGLK+SP+ W +FD + GF
Sbjct: 136 LHGELEDEIYMDQPEGFIVPGKEDYVC--KLKRSLYGLKQSPRQWYKRFDSFMLSHGFKW 193
Query: 167 SENDFCLYCKVNCEYKIYLLLFVDDILI 250
SE D C+Y K IYLLL+VDD+LI
Sbjct: 194 SEFDSCVYIKFVNGSPIYLLLYVDDMLI 221
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +1
Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
+ LK LS+ F MKDLG LG+ + +D+ G++ +SQ Y++++L+ FNM ++KP+
Sbjct: 229 ITTLKKQLSSEFDMKDLGAAKKILGMEITRDINFGLLFLSQQSYIKKVLEHFNMHDAKPI 288
Query: 451 STPM--EFKFQMFQSNNSD 501
STP+ FK Q ++D
Sbjct: 289 STPIAAHFKLSALQCASTD 307
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = +3
Query: 531 LGSLMYAVLCTRPDL 575
+GSLMYA++C+RPDL
Sbjct: 322 VGSLMYAMICSRPDL 336
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/85 (30%), Positives = 52/85 (61%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNVSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSENDF 181
LYG + D+YM++P G D + KS+YGLK+S + W + + ++ KG++++++
Sbjct: 8 LYGSLDFDIYMKVPDGID----IPNQKKSLYGLKQSGRMWYNRLSEFLSLKGYTKNDDCP 63
Query: 182 CLYCKVNCEYKIYLLLFVDDILIMG 256
C++ K + + ++VDD+ I+G
Sbjct: 64 CVFIKKSPTGFCIISVYVDDLNIIG 88
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 259 NDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCE 438
N + ++ + +L F MKDLG LG+ +E L +GI+ + Q+ Y +++L+KFNM +
Sbjct: 89 NTQDINEARHHLKTEFEMKDLGQTKFCLGLQLEH-LPSGIL-VHQSAYAQKMLEKFNMDK 146
Query: 439 SKPMSTPM 462
S P TPM
Sbjct: 147 SYPSKTPM 154
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +1
Query: 250 YGTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFN 429
+GTN +V++ +K +LS F MKDLG V L I + + +NG I + Q+HY+ +IL +F
Sbjct: 479 FGTNLEVINEVKSFLSQNFDMKDLGVVDVILNIKLIRG-ENG-ITLLQSHYVEKILNRFG 536
Query: 430 MCESKPMSTPME 465
+SKP TP +
Sbjct: 537 YIDSKPSPTPYD 548
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 158 FSRSENDFCLYCKVNCEYKIYLLLFVDDILIMG 256
F+ +E D C+Y + + L L+VDD+LI G
Sbjct: 448 FAVNEADKCVYYRHGGGEGVILCLYVDDVLIFG 480
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +1
Query: 250 YGTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFN 429
+GTN +V++ +K +LS F MKDLG L I + + +NG I + Q+HY+ +IL +F
Sbjct: 720 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRG-ENG-ITLLQSHYVEKILNRFG 777
Query: 430 MCESKPMSTPME 465
+SKP TP +
Sbjct: 778 YIDSKPSPTPYD 789
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 119 WNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKIYLLLFVDDILIMG 256
W F K + GF+ ++ D C+Y + + L L+VDDILI G
Sbjct: 676 WEWVFKKKLRPDGFAVNKADKCVYYRHGRGEGVILCLYVDDILIFG 721
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 525 QILGSLMYAVLCTRPDLCPSVAYL 596
QI+GSLMY TRPD+ +V+ L
Sbjct: 809 QIIGSLMYLASATRPDISFAVSKL 832
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 KLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNM--CESKP 447
K +LS+ F MKDLG + LGI + +D + +SQ Y+ ++LKKFNM C + P
Sbjct: 640 KKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSTTP 696
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 531 LGSLMYAVLCTRPDL 575
+GSL YA +CTRPDL
Sbjct: 729 VGSLQYAQVCTRPDL 743
>03_02_0868 + 11937652-11937757,11938097-11938671
Length = 226
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +1
Query: 250 YGTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFN 429
+GTN ++++ +K +L F MKDLG L I + + +NGI + Q+HY+ +IL F
Sbjct: 68 FGTNLEMINEVKSFLYQNFDMKDLGVADVILNIKLIR-CENGITLL-QSHYVEKILNHFG 125
Query: 430 MCESKPMSTPME 465
+SKP TP +
Sbjct: 126 YIDSKPSPTPYD 137
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +2
Query: 92 YGLKKSPKYWNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKIYLLLFVDDILIMG 256
YG K W F K + GF+ +E D C+Y + L L+VDDILI G
Sbjct: 17 YGCKPVGCKW--VFKKKLRPDGFAVNEADKCVYYLHGGVEGVILCLYVDDILIFG 69
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 525 QILGSLMYAVLCTRPDLCPSVAYL 596
QI+GSLMY TRPD+ +V+ L
Sbjct: 157 QIIGSLMYLASATRPDISFAVSKL 180
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +1
Query: 310 MKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPMSTPM 462
M +G +T +LG+ V+Q Q G +SQ Y++ ILKKF M ++KP+ TPM
Sbjct: 1 MSMMGELTFFLGLQVKQ-AQEGTF-ISQTKYVKDILKKFGMEDAKPIKTPM 49
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +1
Query: 250 YGTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKK 423
+GT+ V+ +K YLS F MKDLG L I +++ + G I + Q+HY+ + L++
Sbjct: 749 FGTSLNVIEEVKDYLSKNFEMKDLGEADVILNIKLQRGDEGG-ITLVQSHYVDKALER 805
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 143 IAKKGFSRSENDFCLYCKVNCEYKIYLLLFVDDILIMG 256
I GF +E D C+Y + + L L+VDDILI G
Sbjct: 713 IMSNGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFG 750
>12_02_0482 +
19541017-19541139,19542687-19542765,19542971-19543025,
19543179-19543268,19543344-19543413,19543580-19543850,
19543969-19544026,19544113-19544237,19544326-19544397,
19544484-19544617
Length = 358
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 59 NVSVVKLNKSIYGLKKSPKYWNLKF 133
N+ +V N +IYG+ P YW L F
Sbjct: 157 NILIVGRNYTIYGVYFQPNYWKLNF 181
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 277 NLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGII 381
N++ +L++ +S + L I VE+DL+NGI+
Sbjct: 304 NVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNGIV 338
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 425 SIC-ASQNLCLPQWNLNFRCFSQITQI-LSRK*M*TNSWIFNVCC 553
S C A +N C P+W + CF Q T I LSR W CC
Sbjct: 1243 STCPADRNFCSPEWVRDGLCFHQSTDITLSR----IWQWYEEPCC 1283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,151
Number of Sequences: 37544
Number of extensions: 254807
Number of successful extensions: 527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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