Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)                       55   4e-08
SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)                     53   2e-07
SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)                 35   0.048
SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             28   5.5  
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             28   5.5  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25313| Best HMM Match : REJ (HMM E-Value=0.012)                     28   7.2  
SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6)                    28   7.2  
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.6  

>SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGC---DDNVSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
           L G++QE+VYM+ P G         V KLN+SIYGLK+SP+ WN   D  + K GF+++ 
Sbjct: 607 LNGELQEEVYMKHPEGFVVKGKEHLVCKLNRSIYGLKQSPRCWNAVLDDKLKKMGFAQTT 666

Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILIMG 256
            D C+Y  +  E  I + ++V DIL+ G
Sbjct: 667 GDPCIYTALEGEMFI-IAVYVADILLAG 693



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/85 (29%), Positives = 49/85 (57%)
 Frame = +1

Query: 253 GTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNM 432
           G + K +  +K  L   F +KD+G + ++LG+ V Q  + G + + Q+ Y + +L++F M
Sbjct: 693 GKSGKRMTEVKQALPKQFKIKDMGELHHFLGVKVIQKPETGELWIGQSTYGKGVLERFGM 752

Query: 433 CESKPMSTPMEFKFQMFQSNNSDPK 507
             SK +STP++   ++ ++ N   K
Sbjct: 753 ENSKAISTPVDASTKLVKATNDYEK 777


>SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGCD---DNVS--VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSR 166
           L+  I +++YM+ P G +   +N    V KL KS+YGLK+S + WN    + + + GF+R
Sbjct: 630 LHAPIDQEIYMKQPEGFEVISENGEKLVYKLKKSLYGLKQSGRNWNKLLHESLMESGFNR 689

Query: 167 SENDFCLYCKVNCEYKIYLLLFVDDILI 250
           + +D C+Y K+     + L+++VDD++I
Sbjct: 690 NPSDPCVYSKLVGNEIVILIVWVDDLII 717



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 39/66 (59%)
 Frame = +1

Query: 268 VVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKP 447
           ++++ K  +   F MKDLG ++++LGI   Q    G I M Q+ YL ++L +F M   KP
Sbjct: 724 ILNDFKENMKRHFKMKDLGQISHFLGIDFNQ--APGQITMGQSRYLLKVLHRFEMEGCKP 781

Query: 448 MSTPME 465
            +TP E
Sbjct: 782 RTTPCE 787



 Score = 35.1 bits (77), Expect = 0.048
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = +3

Query: 516 KCRQILGSLMYAVLCTRPDL 575
           K R+I+GSL+YA++CTRPD+
Sbjct: 801 KYREIVGSLIYAMVCTRPDI 820


>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
 Frame = +2

Query: 2    LYGDIQEDVYMRLPPGCD---DNVS--VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSR 166
            L+  I +++YM+ P G +   +N    V KL KS+YGLK+S +  N    + + + GF+R
Sbjct: 754  LHAPIDQEIYMKQPEGFEVIFENGEKLVYKLKKSLYGLKESGRNCNKLLHESLMESGFNR 813

Query: 167  SENDFCLYCKVNCEYKIYLLLFVDDILI 250
            + +D C+Y K+     + L+++V+D++I
Sbjct: 814  NPSDHCVYSKLVGNEIVILIVWVNDLII 841



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 268 VVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQ 360
           +++  K  +   F MKDLG ++++LGI   Q
Sbjct: 848 ILNEFKENMKRHFKMKDLGQISHFLGIDFNQ 878


>SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)
          Length = 627

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/67 (38%), Positives = 44/67 (65%)
 Frame = +1

Query: 265 KVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESK 444
           K +  +K  LS  F MKD+G + ++LG+ V Q  + G + + Q+ Y++ +L+KF M  SK
Sbjct: 448 KRMTEVKQALSKQFKMKDMGKLHHFLGVKVIQKPETGELWIGQSTYVKGVLEKFGMENSK 507

Query: 445 PMSTPME 465
           P+STP++
Sbjct: 508 PISTPVD 514


>SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)
          Length = 283

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)
 Frame = +1

Query: 319 LGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNS 498
           +G ++ +LGI  EQ    G +KMSQ  Y+ +IL++F M   KP +TP E K ++   ++ 
Sbjct: 1   MGRLSYFLGIEFEQG--EGFVKMSQRKYVSKILERFQMSNCKPRATPSEQKLELCDQSSV 58

Query: 499 DPK 507
           DP+
Sbjct: 59  DPR 61



 Score = 35.1 bits (77), Expect = 0.048
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 522 RQILGSLMYAVLCTRPDLCPSVAYLIMGLN 611
           R+ +GSL+YA+ CTRPD+C  V  L   L+
Sbjct: 64  REAVGSLIYAMTCTRPDICWVVTKLSQHLS 93


>SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)
          Length = 412

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 522 RQILGSLMYAVLCTRPDLCPSVAYLIMGLN 611
           R+ +GSL+YA+ CTRPD+C  V  L   L+
Sbjct: 229 REAVGSLIYAMTCTRPDICWVVTKLSQHLS 258


>SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/98 (21%), Positives = 43/98 (43%)
 Frame = +1

Query: 241 HIDYGTNDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILK 420
           ++ +  +  + H+L +YLS+   M     V  YL   V++DL + +     ++    +  
Sbjct: 34  YLSHSVDKDLSHSLDMYLSHNVDMYLSHSVDMYLSHSVDKDLSHSLDMYLSHNVDMYLSH 93

Query: 421 KFNMCESKPMSTPMEFKFQMFQSNNSDPK*KINVDKFL 534
             +M  S  +   +     M+ S+N D     +VD +L
Sbjct: 94  NVDMYLSHNVDMYLSHSVDMYLSHNVDMYLSHSVDMYL 131



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = +1

Query: 274 HNLKLYLSNIFSM-------KDLGH-VTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFN 429
           HN+++YLS+   M         L H V  YL   V++DL + +     ++    +    +
Sbjct: 5   HNVEMYLSHSVDMYLSHSVDMYLSHSVDMYLSHSVDKDLSHSLDMYLSHNVDMYLSHSVD 64

Query: 430 MCESKPMSTPMEFKFQMFQSNNSDPK*KINVDKFL 534
           M  S  +   +     M+ S+N D     NVD +L
Sbjct: 65  MYLSHSVDKDLSHSLDMYLSHNVDMYLSHNVDMYL 99


>SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +2

Query: 53  DDNVSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEN------DFCLYCKVNCEYK 214
           D+N   + + K I+ + +S K W L F+   AK+ +   +N      D  +  K  CEY 
Sbjct: 23  DENAECIAIRKDIFVVVQSFKKWTLCFE---AKEMYLEDQNKVPTLRDDPINTKFACEYG 79

Query: 215 IYLLLFVDDILI 250
           +  +L  D+ LI
Sbjct: 80  VATILCDDNRLI 91


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 116 YWNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKIYLLLFV 235
           Y+N++   V+ ++  +        +CKVNC   ++L LF+
Sbjct: 794 YYNIR-KMVLTRRNCAHDAKGKLFHCKVNCYRAVFLFLFI 832


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/29 (31%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 98  VHIYFCLISQHLHCHHIQV-VVSYKHLPV 15
           ++I   L+S + HCHH Q+ +++++H+ +
Sbjct: 338 INILPLLLSTYYHCHHQQITIINHQHIAI 366


>SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 YWNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKIYLLLFV 235
           Y+N++  K++  K       D    CKVNC   ++L LF+
Sbjct: 388 YYNVR--KMVLTKICHHDAKDTLFDCKVNCYRAVFLFLFI 425


>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 367

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 YWNLKFDKVIAKKGFSRSENDFCLYCKVNCEYKIYLLLFV 235
           Y+N++  K++  K       D    CKVNC   ++L LF+
Sbjct: 303 YYNVR--KMVLTKICHHDAKDTLFDCKVNCYRAVFLFLFI 340


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 259  NDKVVHNLKLYLSNIFSMKDLGHVTNY 339
            NDKV  NLKL + ++   K++G V+ Y
Sbjct: 2636 NDKVSPNLKLSIESVCDEKNIGKVSYY 2662


>SB_25313| Best HMM Match : REJ (HMM E-Value=0.012)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 NDKVVHNLKLYLSNIFSMKDLGHVTNY 339
           NDKV  NLKL + ++   K++G V+ Y
Sbjct: 7   NDKVSPNLKLSIESVCDEKNIGKVSYY 33


>SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 361 DLQNGIIKMSQNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSDPK 507
           D+Q+ + KM + H     LKK+N C      T +E +      N+SDPK
Sbjct: 277 DVQDQLAKMGELHMRTPTLKKYNYCGP---GTKLEMRL-----NSSDPK 317


>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 98  VHIYFCLISQHLHCHHIQVVVSYKHLPVYLH 6
           VHIY   I  H++  HI+V +  KH+ V+++
Sbjct: 70  VHIYDKHIRIHIYDKHIRVHIYNKHIRVHIY 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,599
Number of Sequences: 59808
Number of extensions: 329966
Number of successful extensions: 714
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)