Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1110
(633 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF492763-1|AAM11672.1| 415|Drosophila melanogaster polyprotein ... 73 3e-13
X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p... 71 1e-12
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p... 71 1e-12
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros... 71 1e-12
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot... 71 1e-12
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro... 71 1e-12
X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 60 2e-09
AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p pro... 60 2e-09
AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse tran... 57 2e-08
>AF492763-1|AAM11672.1| 415|Drosophila melanogaster polyprotein
protein.
Length = 415
Score = 72.9 bits (171), Expect = 3e-13
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
L D++EDVY++ P D + V+KL K+IYGLK+S + WN ++V+ GF RS+
Sbjct: 23 LNSDLEEDVYLKQPKNYVDKENPGKVLKLQKAIYGLKQSERLWNDALNEVLQNMGFKRSK 82
Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILIM 253
N+ CLY K Y+ ++VDD++I+
Sbjct: 83 NEACLYYKKQQNGFSYIAVYVDDLIII 109
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/97 (25%), Positives = 50/97 (51%)
Frame = +1
Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
+ ++K ++ F MKD G + +LG+ + + Q G IK+ Q Y+ +L+++ M + +
Sbjct: 116 IEDIKGSIATKFDMKDGGQLRYFLGMEISRKGQTGPIKLCQKRYIENLLRRYGMQSCRLV 175
Query: 451 STPMEFKFQMFQSNNSDPK*KINVDKFLDL*CMLSYV 561
TP + ++ +N K+N+ F L L Y+
Sbjct: 176 GTPFDPGYESGCTNEKCA--KVNLTHFQSLIGSLMYL 210
>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
protein protein.
Length = 1017
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D
Sbjct: 616 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 675
Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
C+Y K N IY+LL+VDD++I
Sbjct: 676 RCIYILDKGNINENIYVLLYVDDVVI 701
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S
Sbjct: 689 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 746
Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
Q+ Y+++IL KFNM +STP+ K ++ NSD
Sbjct: 747 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 782
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
CR ++G LMY +LCTRPDL +V L
Sbjct: 789 CRSLIGCLMYIMLCTRPDLTTAVNIL 814
>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
protein protein.
Length = 1409
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067
Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
C+Y K N IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138
Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
Q+ Y+++IL KFNM +STP+ K ++ NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
CR ++G LMY +LCTRPDL +V L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206
>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
Drosophila melanogastervirus like particle RNA (VLP
H-RNA). ).
Length = 1288
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067
Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
C+Y K N IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138
Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
Q+ Y+++IL KFNM +STP+ K ++ NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
CR ++G LMY +LCTRPDL +V L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206
>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
protein.
Length = 1409
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067
Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
C+Y K N IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138
Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
Q+ Y+++IL KFNM +STP+ K ++ NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
CR ++G LMY +LCTRPDL +V L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206
>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p protein.
Length = 1409
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067
Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
C+Y K N IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138
Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
Q+ Y+++IL KFNM +STP+ K ++ NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
CR ++G LMY +LCTRPDL +V L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206
>X07656-2|CAA30503.1| 982|Drosophila melanogaster protein (
Drosophila melanogasterretrotransposon 1731 sequence. ).
Length = 982
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
L ++++ VYM+ P G D + V+ L K+IYGLK+S + WN K D V+ GF
Sbjct: 632 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 691
Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250
++ CLY + + +L++VDD+++
Sbjct: 692 HEPCLYQQSGQGNLMLILVYVDDLIL 717
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/70 (25%), Positives = 39/70 (55%)
Frame = +1
Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
+ +LK +S F D G + +LG+ V++D G I + + Y++++L+ + +P
Sbjct: 725 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRPA 784
Query: 451 STPMEFKFQM 480
+TP++ Q+
Sbjct: 785 TTPLDAGHQV 794
>AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p
protein.
Length = 714
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
L ++++ VYM+ P G D + V+ L K+IYGLK+S + WN K D V+ GF
Sbjct: 320 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 379
Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250
++ CLY + + +L++VDD+++
Sbjct: 380 HEPCLYQQSGQGNLMLILVYVDDLIL 405
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/70 (25%), Positives = 39/70 (55%)
Frame = +1
Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
+ +LK +S F D G + +LG+ V++D G I + + Y++++L+ + +P
Sbjct: 413 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRAYGSENCRPA 472
Query: 451 STPMEFKFQM 480
+TP++ Q+
Sbjct: 473 TTPLDAGHQV 482
>AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse
transcriptase protein.
Length = 76
Score = 57.2 bits (132), Expect = 2e-08
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +2
Query: 11 DIQEDVYMRLPPGCDDN---VSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSENDF 181
D+ E VYMR P G D V+KL+KSIYGLK+S + WN ++V+ K GFS ++
Sbjct: 1 DLHETVYMRQPEGFIDERYPKKVLKLHKSIYGLKQSGREWNKLLNEVLQKIGFSSCPSEP 60
Query: 182 CLYCK 196
C+Y +
Sbjct: 61 CVYTR 65
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,314,585
Number of Sequences: 53049
Number of extensions: 487165
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -