BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf1110 (633 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF492763-1|AAM11672.1| 415|Drosophila melanogaster polyprotein ... 73 3e-13 X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p... 71 1e-12 X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p... 71 1e-12 X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros... 71 1e-12 X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot... 71 1e-12 BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro... 71 1e-12 X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 60 2e-09 AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p pro... 60 2e-09 AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse tran... 57 2e-08 >AF492763-1|AAM11672.1| 415|Drosophila melanogaster polyprotein protein. Length = 415 Score = 72.9 bits (171), Expect = 3e-13 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 3/87 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172 L D++EDVY++ P D + V+KL K+IYGLK+S + WN ++V+ GF RS+ Sbjct: 23 LNSDLEEDVYLKQPKNYVDKENPGKVLKLQKAIYGLKQSERLWNDALNEVLQNMGFKRSK 82 Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILIM 253 N+ CLY K Y+ ++VDD++I+ Sbjct: 83 NEACLYYKKQQNGFSYIAVYVDDLIII 109 Score = 46.8 bits (106), Expect = 2e-05 Identities = 25/97 (25%), Positives = 50/97 (51%) Frame = +1 Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450 + ++K ++ F MKD G + +LG+ + + Q G IK+ Q Y+ +L+++ M + + Sbjct: 116 IEDIKGSIATKFDMKDGGQLRYFLGMEISRKGQTGPIKLCQKRYIENLLRRYGMQSCRLV 175 Query: 451 STPMEFKFQMFQSNNSDPK*KINVDKFLDL*CMLSYV 561 TP + ++ +N K+N+ F L L Y+ Sbjct: 176 GTPFDPGYESGCTNEKCA--KVNLTHFQSLIGSLMYL 210 >X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical protein protein. Length = 1017 Score = 71.3 bits (167), Expect = 1e-12 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178 L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D Sbjct: 616 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 675 Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250 C+Y K N IY+LL+VDD++I Sbjct: 676 RCIYILDKGNINENIYVLLYVDDVVI 701 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Frame = +1 Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390 N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S Sbjct: 689 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 746 Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501 Q+ Y+++IL KFNM +STP+ K ++ NSD Sbjct: 747 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 782 Score = 37.5 bits (83), Expect = 0.015 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596 CR ++G LMY +LCTRPDL +V L Sbjct: 789 CRSLIGCLMYIMLCTRPDLTTAVNIL 814 >X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical protein protein. Length = 1409 Score = 71.3 bits (167), Expect = 1e-12 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178 L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067 Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250 C+Y K N IY+LL+VDD++I Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Frame = +1 Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390 N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138 Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501 Q+ Y+++IL KFNM +STP+ K ++ NSD Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174 Score = 37.5 bits (83), Expect = 0.015 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596 CR ++G LMY +LCTRPDL +V L Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206 >X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Drosophila melanogastervirus like particle RNA (VLP H-RNA). ). Length = 1288 Score = 71.3 bits (167), Expect = 1e-12 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178 L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067 Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250 C+Y K N IY+LL+VDD++I Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Frame = +1 Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390 N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138 Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501 Q+ Y+++IL KFNM +STP+ K ++ NSD Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174 Score = 37.5 bits (83), Expect = 0.015 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596 CR ++G LMY +LCTRPDL +V L Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206 >X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein protein. Length = 1409 Score = 71.3 bits (167), Expect = 1e-12 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178 L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067 Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250 C+Y K N IY+LL+VDD++I Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Frame = +1 Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390 N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138 Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501 Q+ Y+++IL KFNM +STP+ K ++ NSD Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174 Score = 37.5 bits (83), Expect = 0.015 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596 CR ++G LMY +LCTRPDL +V L Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206 >BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p protein. Length = 1409 Score = 71.3 bits (167), Expect = 1e-12 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178 L G ++E++YMRLP G N +V KLNK+IYGLK++ + W F++ + + F S D Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067 Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250 C+Y K N IY+LL+VDD++I Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093 Score = 57.2 bits (132), Expect = 2e-08 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Frame = +1 Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390 N++V++ + T D ++N K YL F M DL + +++GI +E +Q I +S Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138 Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501 Q+ Y+++IL KFNM +STP+ K ++ NSD Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174 Score = 37.5 bits (83), Expect = 0.015 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +3 Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596 CR ++G LMY +LCTRPDL +V L Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206 >X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Drosophila melanogasterretrotransposon 1731 sequence. ). Length = 982 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172 L ++++ VYM+ P G D + V+ L K+IYGLK+S + WN K D V+ GF Sbjct: 632 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 691 Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250 ++ CLY + + +L++VDD+++ Sbjct: 692 HEPCLYQQSGQGNLMLILVYVDDLIL 717 Score = 41.1 bits (92), Expect = 0.001 Identities = 18/70 (25%), Positives = 39/70 (55%) Frame = +1 Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450 + +LK +S F D G + +LG+ V++D G I + + Y++++L+ + +P Sbjct: 725 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRPA 784 Query: 451 STPMEFKFQM 480 +TP++ Q+ Sbjct: 785 TTPLDAGHQV 794 >AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p protein. Length = 714 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Frame = +2 Query: 2 LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172 L ++++ VYM+ P G D + V+ L K+IYGLK+S + WN K D V+ GF Sbjct: 320 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 379 Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250 ++ CLY + + +L++VDD+++ Sbjct: 380 HEPCLYQQSGQGNLMLILVYVDDLIL 405 Score = 41.1 bits (92), Expect = 0.001 Identities = 18/70 (25%), Positives = 39/70 (55%) Frame = +1 Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450 + +LK +S F D G + +LG+ V++D G I + + Y++++L+ + +P Sbjct: 413 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRAYGSENCRPA 472 Query: 451 STPMEFKFQM 480 +TP++ Q+ Sbjct: 473 TTPLDAGHQV 482 >AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse transcriptase protein. Length = 76 Score = 57.2 bits (132), Expect = 2e-08 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Frame = +2 Query: 11 DIQEDVYMRLPPGCDDN---VSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSENDF 181 D+ E VYMR P G D V+KL+KSIYGLK+S + WN ++V+ K GFS ++ Sbjct: 1 DLHETVYMRQPEGFIDERYPKKVLKLHKSIYGLKQSGREWNKLLNEVLQKIGFSSCPSEP 60 Query: 182 CLYCK 196 C+Y + Sbjct: 61 CVYTR 65 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,314,585 Number of Sequences: 53049 Number of extensions: 487165 Number of successful extensions: 950 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 938 length of database: 24,988,368 effective HSP length: 82 effective length of database: 20,638,350 effective search space used: 2641708800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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