SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein ...    73   3e-13
X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p...    71   1e-12
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p...    71   1e-12
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros...    71   1e-12
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot...    71   1e-12
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro...    71   1e-12
X07656-2|CAA30503.1|  982|Drosophila melanogaster protein ( Dros...    60   2e-09
AY119276-1|AAM51136.1|  714|Drosophila melanogaster SD26211p pro...    60   2e-09
AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse tran...    57   2e-08

>AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein
           protein.
          Length = 415

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
           L  D++EDVY++ P    D  +   V+KL K+IYGLK+S + WN   ++V+   GF RS+
Sbjct: 23  LNSDLEEDVYLKQPKNYVDKENPGKVLKLQKAIYGLKQSERLWNDALNEVLQNMGFKRSK 82

Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILIM 253
           N+ CLY K       Y+ ++VDD++I+
Sbjct: 83  NEACLYYKKQQNGFSYIAVYVDDLIII 109



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 25/97 (25%), Positives = 50/97 (51%)
 Frame = +1

Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
           + ++K  ++  F MKD G +  +LG+ + +  Q G IK+ Q  Y+  +L+++ M   + +
Sbjct: 116 IEDIKGSIATKFDMKDGGQLRYFLGMEISRKGQTGPIKLCQKRYIENLLRRYGMQSCRLV 175

Query: 451 STPMEFKFQMFQSNNSDPK*KINVDKFLDL*CMLSYV 561
            TP +  ++   +N      K+N+  F  L   L Y+
Sbjct: 176 GTPFDPGYESGCTNEKCA--KVNLTHFQSLIGSLMYL 210


>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
           protein protein.
          Length = 1017

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
           L G ++E++YMRLP G   N  +V KLNK+IYGLK++ + W   F++ + +  F  S  D
Sbjct: 616 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 675

Query: 179 FCLYC--KVNCEYKIYLLLFVDDILI 250
            C+Y   K N    IY+LL+VDD++I
Sbjct: 676 RCIYILDKGNINENIYVLLYVDDVVI 701



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 214 NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
           N++V++    +   T D   ++N K YL   F M DL  + +++GI +E  +Q   I +S
Sbjct: 689 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 746

Query: 391 QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
           Q+ Y+++IL KFNM     +STP+  K   ++  NSD
Sbjct: 747 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 782



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 519 CRQILGSLMYAVLCTRPDLCPSVAYL 596
           CR ++G LMY +LCTRPDL  +V  L
Sbjct: 789 CRSLIGCLMYIMLCTRPDLTTAVNIL 814


>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
            protein protein.
          Length = 1409

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
            L G ++E++YMRLP G   N  +V KLNK+IYGLK++ + W   F++ + +  F  S  D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067

Query: 179  FCLYC--KVNCEYKIYLLLFVDDILI 250
             C+Y   K N    IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 214  NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
            N++V++    +   T D   ++N K YL   F M DL  + +++GI +E  +Q   I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138

Query: 391  QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
            Q+ Y+++IL KFNM     +STP+  K   ++  NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 519  CRQILGSLMYAVLCTRPDLCPSVAYL 596
            CR ++G LMY +LCTRPDL  +V  L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206


>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
            Drosophila melanogastervirus like particle RNA (VLP
            H-RNA). ).
          Length = 1288

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
            L G ++E++YMRLP G   N  +V KLNK+IYGLK++ + W   F++ + +  F  S  D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067

Query: 179  FCLYC--KVNCEYKIYLLLFVDDILI 250
             C+Y   K N    IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 214  NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
            N++V++    +   T D   ++N K YL   F M DL  + +++GI +E  +Q   I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138

Query: 391  QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
            Q+ Y+++IL KFNM     +STP+  K   ++  NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 519  CRQILGSLMYAVLCTRPDLCPSVAYL 596
            CR ++G LMY +LCTRPDL  +V  L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206


>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
            protein.
          Length = 1409

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
            L G ++E++YMRLP G   N  +V KLNK+IYGLK++ + W   F++ + +  F  S  D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067

Query: 179  FCLYC--KVNCEYKIYLLLFVDDILI 250
             C+Y   K N    IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 214  NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
            N++V++    +   T D   ++N K YL   F M DL  + +++GI +E  +Q   I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138

Query: 391  QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
            Q+ Y+++IL KFNM     +STP+  K   ++  NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 519  CRQILGSLMYAVLCTRPDLCPSVAYL 596
            CR ++G LMY +LCTRPDL  +V  L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206


>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p protein.
          Length = 1409

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2    LYGDIQEDVYMRLPPGCDDNV-SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSEND 178
            L G ++E++YMRLP G   N  +V KLNK+IYGLK++ + W   F++ + +  F  S  D
Sbjct: 1008 LNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVD 1067

Query: 179  FCLYC--KVNCEYKIYLLLFVDDILI 250
             C+Y   K N    IY+LL+VDD++I
Sbjct: 1068 RCIYILDKGNINENIYVLLYVDDVVI 1093



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 214  NLFVIVCR*HIDYGTNDKV-VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMS 390
            N++V++    +   T D   ++N K YL   F M DL  + +++GI +E  +Q   I +S
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE--MQEDKIYLS 1138

Query: 391  QNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSD 501
            Q+ Y+++IL KFNM     +STP+  K   ++  NSD
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKIN-YELLNSD 1174



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 519  CRQILGSLMYAVLCTRPDLCPSVAYL 596
            CR ++G LMY +LCTRPDL  +V  L
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNIL 1206


>X07656-2|CAA30503.1|  982|Drosophila melanogaster protein (
           Drosophila melanogasterretrotransposon 1731 sequence. ).
          Length = 982

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
           L  ++++ VYM+ P G  D  +   V+ L K+IYGLK+S + WN K D V+   GF    
Sbjct: 632 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 691

Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250
           ++ CLY +      + +L++VDD+++
Sbjct: 692 HEPCLYQQSGQGNLMLILVYVDDLIL 717



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/70 (25%), Positives = 39/70 (55%)
 Frame = +1

Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
           + +LK  +S  F   D G +  +LG+ V++D   G I +  + Y++++L+ +     +P 
Sbjct: 725 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRPA 784

Query: 451 STPMEFKFQM 480
           +TP++   Q+
Sbjct: 785 TTPLDAGHQV 794


>AY119276-1|AAM51136.1|  714|Drosophila melanogaster SD26211p
           protein.
          Length = 714

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGCDDNVS---VVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSE 172
           L  ++++ VYM+ P G  D  +   V+ L K+IYGLK+S + WN K D V+   GF    
Sbjct: 320 LNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACN 379

Query: 173 NDFCLYCKVNCEYKIYLLLFVDDILI 250
           ++ CLY +      + +L++VDD+++
Sbjct: 380 HEPCLYQQSGQGNLMLILVYVDDLIL 405



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/70 (25%), Positives = 39/70 (55%)
 Frame = +1

Query: 271 VHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPM 450
           + +LK  +S  F   D G +  +LG+ V++D   G I +  + Y++++L+ +     +P 
Sbjct: 413 MEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRAYGSENCRPA 472

Query: 451 STPMEFKFQM 480
           +TP++   Q+
Sbjct: 473 TTPLDAGHQV 482


>AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 76

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
 Frame = +2

Query: 11  DIQEDVYMRLPPGCDDN---VSVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGFSRSENDF 181
           D+ E VYMR P G  D      V+KL+KSIYGLK+S + WN   ++V+ K GFS   ++ 
Sbjct: 1   DLHETVYMRQPEGFIDERYPKKVLKLHKSIYGLKQSGREWNKLLNEVLQKIGFSSCPSEP 60

Query: 182 CLYCK 196
           C+Y +
Sbjct: 61  CVYTR 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,314,585
Number of Sequences: 53049
Number of extensions: 487165
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -