Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41550-6|AAL06046.2|  135|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    27   8.4  

>U41550-6|AAL06046.2|  135|Caenorhabditis elegans Hypothetical
           protein R04A9.6 protein.
          Length = 135

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 LYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQ-NHYLRQILKK 423
           L   NIF MKD  H+ N +     +   +G+ ++++ +H +R + +K
Sbjct: 13  LKTDNIFEMKDRNHLLNMIPTMFMESTLHGVCELTRPDHLMRPLARK 59


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 265 KVVHNLKLYLSNIFSMKDLGH-VTNYL----GIHVEQDLQNGIIKMS-QNHYLRQILKK 423
           KV+ N+KLY+  +F   D    +  YL    GI    DL   + + + Q H L +++KK
Sbjct: 382 KVIENIKLYVRRVFITDDFADMLPKYLSFIRGIVDSDDLPLNVSRENLQQHKLLKVIKK 440


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 215 FYIHNLLYNKDKNHFQIY*TLS*Q*LYQTLNSSTWVISLVHIYFCLISQHLHCHHIQVVV 36
           FY+HNL ++K+K+ F I        L+     ST+++  + +Y  LI +    +   V++
Sbjct: 37  FYVHNLNWHKEKD-FPIVQFFYKMVLFSYFLFSTFILYFIVLY--LIVRDSQAYKTSVII 93

Query: 35  SY 30
           S+
Sbjct: 94  SF 95


>U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical
           protein C55B6.4 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  VYMRLPPGCDDNVSVVKLNKSIYGLKKSPKYWNLKFDKVIAK 151
           +Y  +    DD + VV  NK++ G  K PK W  KF++ I K
Sbjct: 88  LYRPITDPSDDRIFVVT-NKNVDGYVKPPKNW--KFEEEIRK 126


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 301 IFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPMSTP--MEFKF 474
           +F  K    V NYLGI +   L   I K+       ++ KK +   SKP   P  ++   
Sbjct: 470 LFYFKTHKEVLNYLGIGLTDRLWKHIQKLPSFETSIRVFKKQDEISSKPPPAPPLIQNSL 529

Query: 475 QMFQSNNSDPK*KINVDK 528
              Q +N     KI V +
Sbjct: 530 TPLQGSNVPAAPKITVSQ 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,696
Number of Sequences: 27780
Number of extensions: 268793
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)