Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.35 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.46 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.46 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.46 

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 431 ILNFFKICLK*WFCDILIIPFCKSC 357
           I+  F IC   +FC  ++  +CK+C
Sbjct: 277 IMGVFLICWVPFFCVNIVTSYCKTC 301


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 431 ILNFFKICLK*WFCDILIIPFCKSC 357
           I+  F +C   +F   +I+PFC  C
Sbjct: 332 IMGVFVVCWLPFFLMYVIVPFCPDC 356



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 540 LMYAVLCTRPDLCPS--VAYLIMGLNILN 620
           LMY ++   PD CPS  + Y I  L  +N
Sbjct: 345 LMYVIVPFCPDCCPSDRMVYFITWLGYVN 373


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 431 ILNFFKICLK*WFCDILIIPFCKSC 357
           I+  F +C   +F   +I+PFC  C
Sbjct: 332 IMGVFVVCWLPFFLMYVIVPFCPDC 356



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 540 LMYAVLCTRPDLCPS--VAYLIMGLNILN 620
           LMY ++   PD CPS  + Y I  L  +N
Sbjct: 345 LMYVIVPFCPDCCPSDRMVYFITWLGYVN 373


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 431 ILNFFKICLK*WFCDILIIPFCKSC 357
           I+  F +C   +F   +I+PFC  C
Sbjct: 332 IMGVFVVCWLPFFLMYVIVPFCPDC 356



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 540 LMYAVLCTRPDLCPS--VAYLIMGLNILN 620
           LMY ++   PD CPS  + Y I  L  +N
Sbjct: 345 LMYVIVPFCPDCCPSDRMVYFITWLGYVN 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,656
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)