Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1110
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23160.1 68417.m03342 protein kinase family protein contains ...    67   1e-11
At5g45520.1 68418.m05591 hypothetical protein                          27   7.8  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   7.8  

>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
 Frame = +2

Query: 2   LYGDIQEDVYMRLPPGC----DDNV---SVVKLNKSIYGLKKSPKYWNLKFDKVIAKKGF 160
           L GD+ E++YM+LPPG      D++   +V  L KSIYGLK++ + W LKF   +   GF
Sbjct: 200 LNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGF 259

Query: 161 SRSENDFCLYCKVNCEYKIYLLLFVDDILI 250
            +S +D   + K+     + +L++VDDI+I
Sbjct: 260 VQSHSDHTYFLKITATLFLCVLVYVDDIII 289



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 259 NDKVVHNLKLYLSNIFSMKDLGHVTNYLGIHVEQDLQNGIIKMSQNHYLRQILKKFNMCE 438
           ND  V  LK  L + F ++DLG +  +LG+ + +      I + Q  Y   +L +  +  
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLG 350

Query: 439 SKPMSTPME 465
            KP S PM+
Sbjct: 351 CKPSSVPMD 359


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 343 GIHVEQDLQNGIIKMSQNHYLRQILKKFNMCESKPMSTPMEFKFQMFQSNNSDPK*KINV 522
           GI+ E +L++G  K        + LK   + E +  ++P E   + FQ+   D K K NV
Sbjct: 618 GINEEANLEDG--KKHDEGKEERSLKSDEVVEEEKKTSPSEEATEKFQNKPGDQKGKSNV 675

Query: 523 D 525
           +
Sbjct: 676 E 676


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 182 CLYCKVNCEYKIYLLLFVDDI 244
           C +C + C Y I+L+  VD I
Sbjct: 596 CYFCNIRCPYPIFLVATVDRI 616


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,002
Number of Sequences: 28952
Number of extensions: 237126
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)