Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1097
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   3.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.1  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 137 VLFKVFCIIMQEI*ILLYLKNRY----IVHVLLNFHLLHSKI 24
           +L  + CII Q+I    YL N+Y    +VH LL+  LL  K+
Sbjct: 245 ILKSMRCIIGQKIGTDFYLSNKYPIDSVVHCLLSTKLLVRKL 286


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 105 LHYNTKHFKQNKTLWDYECFIRVMNLINERNYLVLF 212
           L  N+  F+  K +WD++    VM +   +NY + F
Sbjct: 219 LDINSLQFRDPKVIWDFDANRWVMIVAMSQNYGIAF 254


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 17  KIIFYYVEDENSIIHVQCTYFLNIKGFK 100
           +I+F  VED + I+  Q T++ N K  K
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,372
Number of Sequences: 5004
Number of extensions: 38768
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)