Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1086
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.1  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   4.4  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   4.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   4.4  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   5.8  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 RESGGSKQCD---FTSRVSHSKRETRRRSPFGSRRSCYRFFS*HVHHGSEGPD 305
           RE GG    D     SR S S  E R RSP+   RS  R  S      S  PD
Sbjct: 100 RERGGRVHGDSGRLRSR-SPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPD 151


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 115 LASALEAFRHNPADGXSHHRPLGRVHEPNVR 23
           LA   +A R+NP+ G  H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 115 LASALEAFRHNPADGXSHHRPLGRVHEPNVR 23
           LA   +A R+NP+ G  H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 66  EXPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 179
           E  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 250 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 122
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,089
Number of Sequences: 5004
Number of extensions: 25134
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)