Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1086
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_29237| Best HMM Match : I-set (HMM E-Value=0)                       28   2.3  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   3.1  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_50746| Best HMM Match : Mid2 (HMM E-Value=0.55)                     27   5.4  
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)                26   9.4  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)             26   9.4  
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          26   9.4  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               26   9.4  
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)                      26   9.4  

>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 327  PRHRTELYPDLRSRDARVKKKTDSTISAIQMG 232
            P+HR EL+PD   R     +KT  ++S+  +G
Sbjct: 1230 PKHRDELHPDTTKRGRARAEKTPVSMSSSPVG 1261


>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
          Length = 869

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = -2

Query: 229 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGXSHHRPL 50
           + R  +FE  + L+K+  LE  + R   ++ +L D  ++  +L+  R++PA+  S    +
Sbjct: 632 KERFIQFENGSLLIKNIKLED-EGRYYCIAGNLADFKQITISLKVVRNSPAEALSSTASM 690

Query: 49  GR 44
           GR
Sbjct: 691 GR 692


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -2

Query: 241  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 92
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 217 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 74
           +R+  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 250 LRDPNGLRRRVSRFECETRLVKSHCLEPPDS 158
           ++DP G+RR++  F  E R V    L+  D+
Sbjct: 105 IKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_50746| Best HMM Match : Mid2 (HMM E-Value=0.55)
          Length = 232

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSC 257
           AE +L +S  D+   +P     ++  DFT R+   +R    R+  G R SC
Sbjct: 18  AERTLGQS-LDVPATQPSRQRANRTHDFTVRILELERVMISRNVSGVRTSC 67


>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 238 NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 116
           NG+R  +  + C  +     C  P +S    +SIS+    R
Sbjct: 39  NGIRHEMHSYSCPPKQKLHICTRPVESSAKYISISVTSRGR 79


>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
          Length = 275

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 VEPRESGGSKQCDFTSRVSHSKRETRRRSPFG 242
           +EP  +  S  C+F+SR+      T+RR PFG
Sbjct: 1   MEPAATPPSSSCEFSSRLL-----TKRRCPFG 27


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 169 PPDSRGSTVSISLPDSARLASALEAFRHNPAD 74
           PP    +   +S P S R+ +AL  FR NP D
Sbjct: 524 PPQEIDAVYKLSQPTSRRVKAALRGFR-NPHD 554


>SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 220 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHN 83
           +S  EC++R VK  CL+       +V IS  D A + +  +   +N
Sbjct: 32  ISYAECDSRRVKVRCLDTNQCVKGSVVISNGDKAYVKACAKRCDYN 77


>SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)
          Length = 259

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = -2

Query: 250 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADG 71
           L +P+GL+ + S      + +    ++  ++  +T +  L D   L   +  F HNP   
Sbjct: 70  LSEPSGLKEQNSEKVGAAKPLLKPAIQTTNAEDATETTKLQDICDLFEKIVDFNHNPTSE 129

Query: 70  XSHHR 56
            +  R
Sbjct: 130 SAKRR 134


>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 102 KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 227
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 221 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 262


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 178 CLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGXSHHRP 53
           C + P   G   S  +PDS+  AS+  A+ H+P  G  +++P
Sbjct: 98  CADNPHPLGME-SGGIPDSSITASSSFAYTHSPHFGRLNNQP 138


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 102  KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 227
            K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 1030 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071


>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
          Length = 649

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 102 KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 227
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 249 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,549
Number of Sequences: 59808
Number of extensions: 223196
Number of successful extensions: 759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)