Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1086
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 66  RTTGRSAECMNQMSETAVPLLL 1
           +  G+  +C N MSE  V +LL
Sbjct: 170 KENGKEFDCHNYMSELTVDILL 191


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 RIQNARRDVEAHLDRGDRAIGFF 270
           ++Q     VEAHL +G  AIG +
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAY 202


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 204 HSKRETRRRSPFGSRRSCYRFFS*HVHHGS 293
           H K   RR S   +    Y   + HVHH +
Sbjct: 256 HQKELVRRDSRRKNYGGVYHLDNHHVHHAN 285


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 108 EASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSC 257
           E+ LAES + +     +  G  K+C+ +   + +     R+ P   R  C
Sbjct: 69  ESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVC 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 180  CDFTSRVSHSKRETRRRSP 236
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,415
Number of Sequences: 438
Number of extensions: 1733
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)