Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1086
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39520.1 68418.m04785 expressed protein predicted protein, Sy...    27   2.5  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   2.5  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    27   4.4  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   4.4  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    26   7.7  

>At5g39520.1 68418.m04785 expressed protein predicted protein,
           Synechocystis sp., PIR:S77152
          Length = 230

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 309 LYPDLRSRDARVKKKTDSTISAI 241
           LYPD R R  R+K + ++TIS +
Sbjct: 158 LYPDRRGRHTRLKGRLETTISFV 180


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 243
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 317 ELSYIRTFGAVMHVLRKKPIARSPRSKWASTSRLAF*MRNATSKVTLFRASRLSGLHS 144
           ELS I+   ++++    KP   +P S W +  +LA   + A  +  L R S + GL +
Sbjct: 660 ELSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLA---KVAIMRKHLNRVSDMHGLEN 714


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 205 IQNARRDVEAHLDRGDRAIGFFLNTCIT 288
           +  ARR++  H D  +   GFFL+  +T
Sbjct: 569 LTQARRNISRHYDLSNELFGFFLDDTMT 596


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 163 DSRGSTVSISLPDSARLASALEAFRHN 83
           DS G  V   LPD   LA+  EA RH+
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHS 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,668,872
Number of Sequences: 28952
Number of extensions: 146937
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)