Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1078
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.7  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   6.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   6.2  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   8.2  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 299 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 394
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 369 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPI 262
           TY+   I SS+ L+   S L++++S  +ASSS  PI
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPI 699


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 568 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 663
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 710 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 609
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 407 VSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNTALRI 523
           VS    N D + ++FS N      +ND+    T TA+ I
Sbjct: 462 VSETAVNDDCKGMNFSGNRRQEDHLNDFTSFPTETAVSI 500


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 14  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 112
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 408 FPGTSSIRTSKTLISRRIQSQLSLLTIG*KKIPIP 512
           F  T SIRT        I +QL + +IG K +P+P
Sbjct: 309 FQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,161
Number of Sequences: 5004
Number of extensions: 56562
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)