Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1078
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 54 1e-07
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 52 4e-07
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 48 1e-05
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 30 2.2
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.8
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 5.0
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 8.8
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 496 RKYQYRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPM 675
+K + +IK+L+ + T LVNA+YFKG+W F+ T F + + I+V
Sbjct: 139 QKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQF 198
Query: 676 MYKRGDYKYGESA 714
MY+ +++Y ES+
Sbjct: 199 MYQSSEFRYLESS 211
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 KAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 436
K FP D + ++ + + G ++ MAN+++ G ++ E F S++ F++++
Sbjct: 58 KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117
Query: 437 QNIDFSKNTVAAK-SINDWVEENTNTALR 520
+D+ KN+ A+ ++N WVE+ T ++
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 511 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRG 690
+I DL+ P + T LVNAIYFKG W F + + +F + ++V MM+++
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKS 166
Query: 691 DYKY 702
+KY
Sbjct: 167 KFKY 170
Score = 34.7 bits (76), Expect = 0.076
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENT 505
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERT 104
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 514 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 687
IK+L+ ++S T ++VNA+YFKG W +F E T F+V S + I+V MM ++
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENT 505
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV + T
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQT 109
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 383 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNT 511
K +E+ + S +F+ + +N+DFS + ++ DW+ E NT
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENT 500
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 393 RILQSFPGTSSIRTSKTLISRRIQSQLS 476
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 69 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 236
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 77 CHCRDGDSKQTNDCL 33
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.9 bits (59), Expect = 8.8
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = -3
Query: 519 LNAVLVFSSTQSLIDLAATVFFEKSMFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSS 340
LN+VL+FS+ Q+ AAT F+ + + TT K +YT
Sbjct: 41 LNSVLLFSTLQTDDKYAATHLFQSDRVPAMPSRPATTTTTKNVSALPPPPSYTAPQPPID 100
Query: 339 TPLIDRRSRLLLANSVRIASSSGKPIAFKALHGFHHQKLKLTE 211
+D R L+A ++ S K + L FH ++ E
Sbjct: 101 RERMDLHERSLVAQTIAAFSVHTKATSRSHLE-FHVAAVRAME 142
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 234 HQKLKLTEREEAAPKMPRGQRFSL 163
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 234 HQKLKLTEREEAAPKMPRGQRFSL 163
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 234 HQKLKLTEREEAAPKMPRGQRFSL 163
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 234 HQKLKLTEREEAAPKMPRGQRFSL 163
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.9 bits (59), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 708 LSIFIIAAFIHHGYFDCF 655
LS++++ +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 234 HQKLKLTEREEAAPKMPRGQRFSL 163
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,635
Number of Sequences: 59808
Number of extensions: 417619
Number of successful extensions: 1285
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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