Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1078
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.72 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.9  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 478 RLSCDCILREINVLD 434
           +L C+CIL+  N+LD
Sbjct: 60  QLYCECILKNFNILD 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 410 SRDVFNSDVQNIDFSKNTVAAKSINDW-VEENTNTALRI*LIRTRSAQPQRLFSSTPSIS 586
           S ++  +  QNID +KNT+     ND  + E   T     L R   + P  +   T  ++
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMN 469

Query: 587 RE 592
            E
Sbjct: 470 LE 471


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 189 MPRGQRFSLDYFSLLR 142
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 189 MPRGQRFSLDYFSLLR 142
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +1

Query: 580 YFKGAWSSKFDERLTSDRDFYVSKDKTIKVP 672
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 SDVQNIDFSKNTVAAKSINDWVEENTNTALR 520
           S+++ I  S + V       W++EN+  AL+
Sbjct: 184 SNIKVISISPDLVETDMTAQWLKENSRLALK 214


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 563 TAAVAELSESGLTKSLMRYW 504
           T A+ +  ESG  +SL  +W
Sbjct: 780 TLAILDFHESGFMESLDNHW 799


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 162 PGKSVVLSAFSVLPPLAQLALASDGET 242
           P K +   AF   PPL + A+    +T
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQT 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,450
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)