Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.0  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.2  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   6.2  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.2  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 363 SNVSEPKARPVPDIPR 316
           S  + P  +P+PDIPR
Sbjct: 117 SQPAAPGGQPIPDIPR 132


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 363 SNVSEPKARPVPDIPR 316
           S  + P  +P+PDIPR
Sbjct: 176 SQPAAPGGQPIPDIPR 191


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 363 SNVSEPKARPVPDIPR 316
           S  + P  +P+PDIPR
Sbjct: 117 SQPAAPGGQPIPDIPR 132


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 363 SNVSEPKARPVPDIPR 316
           S  + P  +P+PDIPR
Sbjct: 176 SQPAAPGGQPIPDIPR 191


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 409 TMRIWKQLSFTN 444
           T R+W Q +FTN
Sbjct: 96  TQRVWSQYNFTN 107


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKL 477
           GW         +ESG +    CLE+T K+
Sbjct: 41  GWDVFRDPPIKEESGSMANQKCLEITVKI 69


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKL 477
           GW         +ESG +    CLE+T K+
Sbjct: 41  GWDVFRDPPIKEESGSMANQKCLEITVKI 69


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKL 477
           GW         +ESG +    CLE+T K+
Sbjct: 41  GWDVFRDPPIKEESGSMANQKCLEITVKI 69


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKL 477
           GW         +ESG +    CLE+T K+
Sbjct: 41  GWDVFRDPPIKEESGSMANQKCLEITVKI 69


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 595 YCGTVVSYYISDGLMGNSYFVFKKAVMS 512
           Y GT +SY+IS+     +Y  +KK   S
Sbjct: 54  YIGTDLSYFISNVYQILAYNFWKKKYWS 81


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 535 VFKKAVMSLL*HVWSLPENFQYGPRS 458
           ++ + +  +L HVW L + F   PRS
Sbjct: 1   MWSENITDVLKHVWFLSKLFLLCPRS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,018
Number of Sequences: 336
Number of extensions: 3580
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)