Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    32   0.057
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    27   1.6  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.8  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   5.0  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   6.6  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   8.7  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -1

Query: 614 GNVISKILWNSGVLLHIGWSDGEQLLCIQESGDVLIMTCL 495
           G ++  + W+   L+ +GW++ E+L+ + + G V +   L
Sbjct: 79  GQLLQTLTWDKTSLVGMGWNENEELIVVSKQGQVRVYNLL 118


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 309 EPISCWCAVNSSFIVCRDKRFINAN*VNPGPFFCVQKSR-TPTHRSYLSWLHRM 151
           +P+       +  ++ RD  +  A+  NPG FFC+  +R   +  S   +LHR+
Sbjct: 85  DPLKSQVKSETRCVISRDSGYTKAD-KNPGSFFCLYFARGMCSEGSKCEYLHRL 137


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 142 IAFFTDSGFLWIGSSDLRNNYCELDTDYIKQPK 44
           + FF +  +LW GS  L     E  + ++++PK
Sbjct: 167 VIFFPNKEYLWTGSDSLTPLTSEAISQFLEKPK 199


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 599 KILWNSGVLLHIGWSDGEQLLCIQES 522
           ++ W S   L IGWSD   ++ IQ S
Sbjct: 218 QLFWQSESRLVIGWSDQIMIVSIQRS 243


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 406 YTMRIWKQLSFTNFCISDFLAHIESFLVSSKHV 504
           + +R  ++LS + F + D+L H +S   ++KH+
Sbjct: 307 HVLRSLQRLSASTFPMKDYLVHCKSNQETAKHI 339


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 176 PIYRGFTEWQAHCVLYRLWFPMDWIFRFE 90
           P++  F +W    +LY      D+++R E
Sbjct: 117 PLFHSFQDWVVRSLLYHPQLEYDYVWRIE 145


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 508 IRTSPLS*IQSSCSPSDHPI-CSRTPLFHNIFDITF 612
           ++ +P+S + S   P+   I  SRTP+ H  FD+ F
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPVRHTQFDVNF 411


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 530 EYKVAVPHQTIRYVVGHHCSTISL 601
           EY  +  HQ IR  +G +C T+ +
Sbjct: 402 EYFSSTNHQLIRSEIGEYCKTLDI 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,771
Number of Sequences: 5004
Number of extensions: 58359
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)