Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525...    31   0.55 
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539     28   6.8  
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764...    28   6.8  

>01_06_0179 +
           27250706-27251593,27252172-27252462,27252510-27252575,
           27252732-27252871,27254709-27254814,27254898-27254990,
           27255398-27255487,27256403-27256525,27256708-27256781,
           27256878-27256932,27257087-27257322,27257959-27258088,
           27258170-27258272,27258428-27258525,27258973-27259038,
           27259252-27259419
          Length = 908

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -2

Query: 178 ILSIVASQNGKHIAFFTDSGFLWIGSSDLRNNYCELDTDYIKQPKEFM*CGSQAVAAHW 2
           +  +  S NGK +A F   G L +  +D      E + D    P +   CG  +V  +W
Sbjct: 258 VQKMAVSPNGKLLAAFAHDGRLLVIPTDFSKIIFEYECDSALPPDQIAWCGLDSVLLYW 316


>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
          Length = 702

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 289 APA*YRFIGSWYIRNRSSFWFRNITHKEHSI 381
           AP  YR    W  ++R   WF NI HKE SI
Sbjct: 151 APPKYRTPFKWP-QSRDFAWFNNIPHKELSI 180


>05_05_0208 +
           23275931-23275996,23276084-23276196,23276279-23276459,
           23276590-23276674,23276974-23277104,23277194-23277432,
           23277512-23277748,23277838-23277992,23278039-23278271,
           23278359-23278521,23278613-23278818,23278960-23279019,
           23279106-23279198,23279406-23279569,23280070-23280138,
           23280241-23280382,23280490-23280546
          Length = 797

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 115 LWIGSSDLRNNYCELDTDYIKQPKEFM*CGSQAV 14
           L IG  DLRN+  +L    I+ P E+M   S AV
Sbjct: 43  LIIGMDDLRNHSLDLARRVIRSPAEYMQPASDAV 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,495,278
Number of Sequences: 37544
Number of extensions: 363177
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)