Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32916| Best HMM Match : Vps16_N (HMM E-Value=2.5e-07)               44   1e-04
SB_9619| Best HMM Match : Vps16_N (HMM E-Value=2e-07)                  44   1e-04
SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  

>SB_32916| Best HMM Match : Vps16_N (HMM E-Value=2.5e-07)
          Length = 369

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -2

Query: 190 PYTQILSIVASQNGKHIAFFTDSGFLWIGSSDLRN 86
           P   I  +  S NG ++A FTDSG LWIGS+DL++
Sbjct: 80  PVNSITEMALSFNGAYLALFTDSGLLWIGSADLQD 114


>SB_9619| Best HMM Match : Vps16_N (HMM E-Value=2e-07)
          Length = 214

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -2

Query: 190 PYTQILSIVASQNGKHIAFFTDSGFLWIGSSDLRN 86
           P   I  +  S NG ++A FTDSG LWIGS+DL++
Sbjct: 94  PVNSITEMALSFNGAYLALFTDSGLLWIGSADLQD 128



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -3

Query: 462 EVRDTKVCKAQLFPNPHGIGLAVITTTNRMFLVSNVSEPKARPVPDIPRANEPISCW 292
           E + ++V + ++F +  G GLA++T +    + +N+ + + +   D P  N P S W
Sbjct: 1   EAQMSQVIECRVFRSSAGTGLAILTGSYHFIVTTNIDDVRCKQFADPPGLNAPPSSW 57


>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +3

Query: 30  HYMNSLGCLI*SVSNSQ*LFLKSEDPIHR----KPESVKNAMCLPFCEATIDRICV*GFL 197
           HY   L     +V N + L  K E PIHR      E+ K    LPF +       +  F+
Sbjct: 180 HYDELLAAETRAVKNGKGLHSKKEPPIHRVADLSGEAAKAKQFLPFLQRAGRSSAIVEFV 239

Query: 198 ISGRKRMALDSPSWHL*ISYL 260
            SG  RM L  P     +++L
Sbjct: 240 ASG-SRMRLYLPKETCLVTFL 259


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 225  PGPFFCVQKSRTPTHRSYLSWLHRMASTLRSLPTLVS 115
            P  F    KSRTP+  S  S LH+  +T  SLP+L S
Sbjct: 1346 PSLFSSFHKSRTPSLLSLFSSLHKARTT--SLPSLFS 1380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,579,535
Number of Sequences: 59808
Number of extensions: 433864
Number of successful extensions: 1317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)