Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68333-4|CAA92723.2|  271|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>Z68333-4|CAA92723.2|  271|Caenorhabditis elegans Hypothetical
           protein C05C12.4 protein.
          Length = 271

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 286 CKL*FYSVSR*EIYKCQLGESRAILLRPEIKNPY 185
           CK  +Y  S  EI+ C +GE R  +   EI+N Y
Sbjct: 53  CKYGYYGPSCFEIFDCVIGELREDICSDEIENDY 86


>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 611 NVISKILWNSGVLLHIGWSDGEQLLCIQESGDVLIMTCLEL 489
           +++SK+ W   ++   GWS G  +  +++ GD    T L +
Sbjct: 98  SLMSKVFWAIVIMACAGWSIGNTISILKQYGDEATTTLLTI 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,298
Number of Sequences: 27780
Number of extensions: 324922
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)