Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1076
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi...    30   1.1  
At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim...    29   2.4  
At4g04500.1 68417.m00653 protein kinase family protein contains ...    29   2.4  
At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    28   4.3  
At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.3  
At5g36260.1 68418.m04374 aspartyl protease family protein contai...    27   7.5  
At3g44130.1 68416.m04731 F-box family protein contains F-box dom...    27   7.5  
At3g18340.1 68416.m02333 F-box family protein contains F-box dom...    27   7.5  
At2g07120.1 68415.m00814 F-box family protein-related contains T...    27   7.5  

>At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam
           profiles: PF04841 Vps16, N-terminal region, PF04840:
           Vps16, C-terminal region; identical to cDNA VCL1 (VCL1)
           GI:13877132
          Length = 858

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 614 GNVISKILWN--SGVLLHIGWSDGEQLLCIQESGDV 513
           G ++S+ +W    G L+ + WSD + L+CI + G +
Sbjct: 75  GILLSETVWKHPGGRLIGMSWSDDQTLICIVQDGTI 110



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/59 (20%), Positives = 26/59 (44%)
 Frame = -2

Query: 178 ILSIVASQNGKHIAFFTDSGFLWIGSSDLRNNYCELDTDYIKQPKEFM*CGSQAVAAHW 2
           +  ++ S NGK +  FT  G + +   + +    +   +    P++   CG  +V  +W
Sbjct: 243 VQKMIVSPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESALPPQQMAWCGMDSVLLYW 301


>At5g51470.1 68418.m06383 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 581

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 286 SAPA*YRFIGSWYIRNRSSFWFRNITHKEHSISCSD 393
           S+ A   F  S Y +NR S+W  + T  +  I CSD
Sbjct: 158 SSAASTSFFKSDYFKNRPSYWHWSYTSPDEVILCSD 193


>At4g04500.1 68417.m00653 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 210 CVQK--SRTPTHRSYLSWLHRMASTLRSLPTLVSY 112
           CVQ+  S+ P+  S L WL R A+    +PT V+Y
Sbjct: 602 CVQEDISKRPSINSILFWLERHATITMPVPTPVAY 636


>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -2

Query: 217 ILLRPEIKNPYTQILSIVASQNG-------KHIAFFTDSGFLWIGSSDLRNNYCELD 68
           +L+ PE   P  Q LS+ ++QNG       K +A   D G L IGS    +N  +LD
Sbjct: 124 MLMYPEADIPICQ-LSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLD 179


>At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to gibberellin 20-oxidase from A.
           thaliana [gi:1109699], N. tabacum [GI:3402332]; contains
           Pfam profile: PF03171 oxidoreductase, 2OG-Fe(II)
           oxygenase family
          Length = 251

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 495 GAYQKTFNMGQE-VRDTKVCKAQLFPNP 415
           G Y+++F +G E   DT  C+A ++PNP
Sbjct: 26  GDYKESFFIGIEGSNDTPFCRANIWPNP 53


>At5g36260.1 68418.m04374 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 482

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKLSIWAKKSEIQKFVKLNC 426
           GW  G   +  Q+  DV+++  L L+ KL ++  ++E+  +   NC
Sbjct: 390 GWQSGG--MTTQDGADVILLGDLVLSNKLVVYDLENEVIGWADHNC 433


>At3g44130.1 68416.m04731 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 313

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWF 351
           F+D+ EWP +   G Y SL    Y T  Y+      F+GS+      S  F
Sbjct: 181 FIDSPEWPMLAGRGEYVSLNGNLYWT-AYNEETREHFLGSFNFSTEISMRF 230


>At3g18340.1 68416.m02333 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 361

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWFRNITHKEHS 378
           F+D+ EWP +   G Y SL    Y T  Y+      F+GS+      S  F  +   +H 
Sbjct: 172 FIDSPEWPTLAGRGEYVSLNGNLYWT-AYNEDTREHFLGSFDFSTEISMHFCLLPCAKHV 230

Query: 379 ISCSD 393
               D
Sbjct: 231 SGLQD 235


>At2g07120.1 68415.m00814 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to  F-box protein family, AtFBX9 (GI:20197985)
           [Arabidopsis thaliana]
          Length = 353

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWF 351
           F+D+ EWP +   G Y SL    Y T  Y+      F+GS+      S  F
Sbjct: 164 FIDSPEWPMLAGRGEYVSLNGNLYWT-AYNEDTREHFLGSFDFSTEISMHF 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,814
Number of Sequences: 28952
Number of extensions: 304181
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)