BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf1076 (614 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi... 30 1.1 At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim... 29 2.4 At4g04500.1 68417.m00653 protein kinase family protein contains ... 29 2.4 At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring... 28 4.3 At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 4.3 At5g36260.1 68418.m04374 aspartyl protease family protein contai... 27 7.5 At3g44130.1 68416.m04731 F-box family protein contains F-box dom... 27 7.5 At3g18340.1 68416.m02333 F-box family protein contains F-box dom... 27 7.5 At2g07120.1 68415.m00814 F-box family protein-related contains T... 27 7.5 >At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profiles: PF04841 Vps16, N-terminal region, PF04840: Vps16, C-terminal region; identical to cDNA VCL1 (VCL1) GI:13877132 Length = 858 Score = 30.3 bits (65), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = -1 Query: 614 GNVISKILWN--SGVLLHIGWSDGEQLLCIQESGDV 513 G ++S+ +W G L+ + WSD + L+CI + G + Sbjct: 75 GILLSETVWKHPGGRLIGMSWSDDQTLICIVQDGTI 110 Score = 30.3 bits (65), Expect = 1.1 Identities = 12/59 (20%), Positives = 26/59 (44%) Frame = -2 Query: 178 ILSIVASQNGKHIAFFTDSGFLWIGSSDLRNNYCELDTDYIKQPKEFM*CGSQAVAAHW 2 + ++ S NGK + FT G + + + + + + P++ CG +V +W Sbjct: 243 VQKMIVSPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESALPPQQMAWCGMDSVLLYW 301 >At5g51470.1 68418.m06383 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter Length = 581 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 286 SAPA*YRFIGSWYIRNRSSFWFRNITHKEHSISCSD 393 S+ A F S Y +NR S+W + T + I CSD Sbjct: 158 SSAASTSFFKSDYFKNRPSYWHWSYTSPDEVILCSD 193 >At4g04500.1 68417.m00653 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 646 Score = 29.1 bits (62), Expect = 2.4 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 210 CVQK--SRTPTHRSYLSWLHRMASTLRSLPTLVSY 112 CVQ+ S+ P+ S L WL R A+ +PT V+Y Sbjct: 602 CVQEDISKRPSINSILFWLERHATITMPVPTPVAY 636 >At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring-opening dioxygenase family contains Pfam PF02900: Catalytic LigB subunit of aromatic ring-opening dioxygenase Length = 269 Score = 28.3 bits (60), Expect = 4.3 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = -2 Query: 217 ILLRPEIKNPYTQILSIVASQNG-------KHIAFFTDSGFLWIGSSDLRNNYCELD 68 +L+ PE P Q LS+ ++QNG K +A D G L IGS +N +LD Sbjct: 124 MLMYPEADIPICQ-LSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLD 179 >At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to gibberellin 20-oxidase from A. thaliana [gi:1109699], N. tabacum [GI:3402332]; contains Pfam profile: PF03171 oxidoreductase, 2OG-Fe(II) oxygenase family Length = 251 Score = 28.3 bits (60), Expect = 4.3 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -3 Query: 495 GAYQKTFNMGQE-VRDTKVCKAQLFPNP 415 G Y+++F +G E DT C+A ++PNP Sbjct: 26 GDYKESFFIGIEGSNDTPFCRANIWPNP 53 >At5g36260.1 68418.m04374 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 482 Score = 27.5 bits (58), Expect = 7.5 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -1 Query: 563 GWSDGEQLLCIQESGDVLIMTCLELTRKLSIWAKKSEIQKFVKLNC 426 GW G + Q+ DV+++ L L+ KL ++ ++E+ + NC Sbjct: 390 GWQSGG--MTTQDGADVILLGDLVLSNKLVVYDLENEVIGWADHNC 433 >At3g44130.1 68416.m04731 F-box family protein contains F-box domain Pfam:PF00646 Length = 313 Score = 27.5 bits (58), Expect = 7.5 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +1 Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWF 351 F+D+ EWP + G Y SL Y T Y+ F+GS+ S F Sbjct: 181 FIDSPEWPMLAGRGEYVSLNGNLYWT-AYNEETREHFLGSFNFSTEISMRF 230 >At3g18340.1 68416.m02333 F-box family protein contains F-box domain Pfam:PF00646 Length = 361 Score = 27.5 bits (58), Expect = 7.5 Identities = 19/65 (29%), Positives = 27/65 (41%) Frame = +1 Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWFRNITHKEHS 378 F+D+ EWP + G Y SL Y T Y+ F+GS+ S F + +H Sbjct: 172 FIDSPEWPTLAGRGEYVSLNGNLYWT-AYNEDTREHFLGSFDFSTEISMHFCLLPCAKHV 230 Query: 379 ISCSD 393 D Sbjct: 231 SGLQD 235 >At2g07120.1 68415.m00814 F-box family protein-related contains TIGRFAM TIGR01640 : F-box protein interaction domain; similar to F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis thaliana] Length = 353 Score = 27.5 bits (58), Expect = 7.5 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +1 Query: 199 FLDAKEWPWIHLVGIYKSLISTHYKTRVYSAPA*YRFIGSWYIRNRSSFWF 351 F+D+ EWP + G Y SL Y T Y+ F+GS+ S F Sbjct: 164 FIDSPEWPMLAGRGEYVSLNGNLYWT-AYNEDTREHFLGSFDFSTEISMHF 213 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,394,814 Number of Sequences: 28952 Number of extensions: 304181 Number of successful extensions: 662 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 662 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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