Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1075
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    28   0.67 
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    28   0.67 
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    26   2.7  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   6.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.3  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 64  VRFLLNFNYRHPVTTGTLRRYSAGAGDTSQFD 159
           + F+ N   RHP     L R SA +GD+  FD
Sbjct: 366 IPFIYNCLQRHPTCMQMLHRSSAESGDSFDFD 397


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 300 HAGIYYKPGSLKAKLCVKGLNLSYK--YFD-QKGIKYSKCGKLIVATERSEVPRLFD 461
           HAG    P   K  L +K LNLSY+  ++D QKG    KC + +       VP L D
Sbjct: 9   HAG---GPNPWKVVLALKELNLSYEQIFYDFQKG--EQKCKEHLALNPNGRVPTLVD 60


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 INILIRKESSIPNVVNLLWQQRDQKFLDFLI 462
           + +L +  +  PN++   W++ D KFLD L+
Sbjct: 85  LTMLAKLLNDHPNLIFKCWERMDMKFLDRLL 115


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -2

Query: 263 KSVSFSTKATFKCGCFNINSLAEAEPTMPPPITATSNC 150
           KS  + +     CGC +I+++     T    +   SNC
Sbjct: 108 KSSLYGSNGINSCGCVDISNVGSESGTKHQIVVGESNC 145


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 277 LWWKANRFLFQLKQPLNVGVLILTPW 200
           LW+     +F + +   +G+ ILTPW
Sbjct: 759 LWYIIFNTIFSVLRSFVLGISILTPW 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,041
Number of Sequences: 5004
Number of extensions: 38242
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)