Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1075
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1082 + 34399798-34399914,34400548-34400829,34401197-344016... 77 6e-15
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 30 0.89
01_05_0188 + 19055421-19056857 30 0.89
01_06_0662 + 30987187-30987277,30987825-30990214 29 2.1
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 3.6
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 4.7
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 28 4.7
04_01_0103 + 1082077-1082167,1083037-1085477 28 4.7
02_04_0017 + 18937774-18937864,18938505-18940945 28 4.7
06_03_0854 + 25400855-25403741,25406174-25407708 27 6.3
11_06_0266 - 21791757-21792982,21793154-21793178 27 8.3
11_04_0466 - 18028169-18028306,18028997-18029306,18029399-180295... 27 8.3
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 8.3
01_06_0341 - 28560046-28560423,28560540-28560881 27 8.3
>01_06_1082 +
34399798-34399914,34400548-34400829,34401197-34401633,
34401800-34401959,34402034-34402147
Length = 369
Score = 77.4 bits (182), Expect = 6e-15
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3
Query: 261 FAFHQSGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKGIKYSKCGKLIVATERS 440
F S NS VIHAGIYY PGSLKA LCV+G + YKY ++ I + + GKLIVAT +
Sbjct: 15 FGTGTSSRNSEVIHAGIYYPPGSLKASLCVRGREMLYKYCAEREIPHKQLGKLIVATGVA 74
Query: 441 EVPRLFDLYERGLKNGV 491
E +L L + +NGV
Sbjct: 75 ETAKLDMLLKNAKENGV 91
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 30.3 bits (65), Expect = 0.89
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 236 TFKCGCFNINSLAEAEPTMPPPITATSNCEVSPAPA 129
+F ++N A A ++PPP++A+S+ E +P PA
Sbjct: 64 SFSFDASSLNIPATASSSVPPPLSASSDEEEAPRPA 99
>01_05_0188 + 19055421-19056857
Length = 478
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 308 TCMNHATVISTLVEGKSVSFSTKATFKCGCFNINSLAEAEPTMPP 174
TC+ HA ++ LV+ +SV+F+ + + G + + +A MPP
Sbjct: 89 TCLEHAHLMPYLVDEESVAFAIRLLERSGLGDETCVPDAYHYMPP 133
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 344 QFCFKGTRFIINTCMN 297
QFC++ R IINTCMN
Sbjct: 273 QFCYEPIRQIINTCMN 288
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 344 QFCFKGTRFIINTCMNHATVISTLVEGKSVSFSTKA 237
QFC++ R I+N CMN + ++E V+ S+ A
Sbjct: 454 QFCYEPIREIMNACMNSKHKLWPMLEKIHVTVSSPA 489
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 212 INSLAEAEPTMPPPITATSNCEVSPAPA 129
++ + E +P PPP +TS+ + SP+P+
Sbjct: 9 LSDVDEEDPLPPPPPPSTSSSQKSPSPS 36
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = -2
Query: 191 EPTMPPPITA----TSNCEVSPAPAL 126
E T PPP A TSNC VSPA L
Sbjct: 171 EITAPPPAAAAEAATSNCSVSPASVL 196
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 344 QFCFKGTRFIINTCMN 297
QFC++ + IINTCMN
Sbjct: 273 QFCYEPIKQIINTCMN 288
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 344 QFCFKGTRFIINTCMN 297
QFC++ + IINTCMN
Sbjct: 273 QFCYEPIKQIINTCMN 288
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 200 AEAEPTMPPPITATSNCEVSPAP 132
AEA P PPP+ A + +PAP
Sbjct: 1167 AEAIPPPPPPLPAAATAVAAPAP 1189
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 221 CFNINSLAEAEPTMPPPITATSNCEVSPAPALYLRNVPVVTG 96
CF +N + +PPP +T +V Y R++P++ G
Sbjct: 126 CFLVNPFSREVVNLPPPFVSTHLVDV------YTRSLPIING 161
>11_04_0466 -
18028169-18028306,18028997-18029306,18029399-18029513,
18029596-18029732,18030198-18030520
Length = 340
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -2
Query: 347 TQFCFKG----TRFIINTCMNHATVISTLVEGKSVSFSTKATFKCGCFNINSLAEAEP 186
T FCF+G T C++H VI +L G+ + ++ TF F +LAE P
Sbjct: 30 TVFCFEGDTAKTAHDHLNCLSHPYVIRSLGYGRGLGKHSRYTFLAVPFFDTTLAEYLP 87
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 188 PTMPPPITATSNCEVSPAPAL 126
P PPP+ A + E +P+PAL
Sbjct: 74 PPPPPPLDADAAAEAAPSPAL 94
>01_06_0341 - 28560046-28560423,28560540-28560881
Length = 239
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 306 GIYYKPGSLKAKLCVKGLNLSYKYFDQ 386
G +Y P +++AK+ + LSY+Y +Q
Sbjct: 17 GTWYSPYAMRAKIALGLKGLSYEYIEQ 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,015
Number of Sequences: 37544
Number of extensions: 221889
Number of successful extensions: 758
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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