Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1075
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32) 124 3e-29
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 31 0.39
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_13192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 27 6.4
SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4) 27 8.5
SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08) 27 8.5
SB_33421| Best HMM Match : SAM_1 (HMM E-Value=7.4e-05) 27 8.5
>SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)
Length = 523
Score = 124 bits (300), Expect = 3e-29
Identities = 57/94 (60%), Positives = 68/94 (72%)
Frame = +3
Query: 213 IKTPTFKGCFS*KRNRFAFHQSGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKG 392
++ P C K + HQSG+NSGVIH GIYY PGSLKAKLCV+GL+L+Y+Y D+
Sbjct: 172 LRHPKLTFCVLEKEKELSMHQSGHNSGVIHCGIYYTPGSLKAKLCVQGLDLTYQYCDEHN 231
Query: 393 IKYSKCGKLIVATERSEVPRLFDLYERGLKNGVK 494
I Y KCGKLIVA E E+P L +LYERG KNGVK
Sbjct: 232 IPYKKCGKLIVAVEDKEIPLLNNLYERGKKNGVK 265
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 202 RELILKHPHLKVALVEKETDL 264
RELIL+HP L ++EKE +L
Sbjct: 168 RELILRHPKLTFCVLEKEKEL 188
>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
Length = 2008
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -2
Query: 344 QFCFKGTRFIINTCMNHATV-ISTLVEGKSVSFSTKATFKCGCFNINSLAEAEPTMPPPI 168
Q+C+ GT + T +N T+ +T S TF GC NI + + P P+
Sbjct: 574 QYCYLGTSKVPATFINETTLKCTTPATAVSARILLLVTFNNGCSNITTNLQVTLEAPAPV 633
Query: 167 TATSNCEVSPAPALYLRNVPVVT 99
+ S A N V T
Sbjct: 634 LTKTQFTDSGAQIEVTFNTEVAT 656
>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.3 bits (65), Expect = 0.91
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 279 GNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKGIKYSKCGKLIVATERSEVPRLF 458
GN G + +G + A V+G+ Y D +G + CGKLI ATE P+L
Sbjct: 68 GNIIGCVLSGDVF--ARFLADRFVEGICPFCNYEDARGDQCDACGKLINATELKLDPKLR 125
Query: 459 DLYERGLKNG 488
+ ++ G
Sbjct: 126 EWVDKSTNEG 135
>SB_13192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 373 NILIRKESSIPNVVNLLWQQRDQKFLDFLI 462
NIL+ E P +VNLLW Q DQ FL L+
Sbjct: 91 NILMSIEH--PFIVNLLWTQHDQTFLYMLL 118
>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 159 CSSDWRRHSRLCFSQGVNIKTPTFKGCFS*KRNR 260
CS D ++S LC G+N +P F GC + RNR
Sbjct: 646 CSVD--KYSPLCGPGGLNYFSPCFAGCTTMTRNR 677
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +3
Query: 315 YKPGSLKAKLCVKG-LNLSYKYFDQKGIKYSKCGKLIVAT----ERSEVPRLFDLYERGL 479
+K GSL ++L + LNLS +Y + KG+ K++++T ERS+ L L + L
Sbjct: 263 HKYGSLFSQLSYEEMLNLSDEYLESKGVTKGARNKILLSTRKLQERSDT--LQKLEKEVL 320
Query: 480 KNG 488
+NG
Sbjct: 321 QNG 323
>SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 321 PGSLKAKLCVKGLNLSYKYFDQKGIKYSKC 410
PG+ + C G +YKY+ ++ +KY++C
Sbjct: 251 PGNYSCERC--GKVFAYKYYRERHLKYTRC 278
>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
Length = 248
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 197 EAEPTMPPPITATSNCEVSPAPALYLRNVPVVT 99
+A PT P P+TA N + SP P V V T
Sbjct: 174 DASPT-PTPVTAKVNADTSPTPTPVTAKVCVET 205
>SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
Length = 251
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 478 SPLSYKSKSLGTSDLSVATISLP 410
SP +Y SL SDL VA +SLP
Sbjct: 53 SPANYFIASLAVSDLLVALVSLP 75
>SB_33421| Best HMM Match : SAM_1 (HMM E-Value=7.4e-05)
Length = 105
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 315 YKPGSLKAKLCVKG-LNLSYKYFDQKGIKYSKCGKLIVATER 437
+K GSL ++L + LNLS +Y + KG+ K++++T +
Sbjct: 12 HKYGSLFSQLSYEEMLNLSDEYLESKGVTKGARNKILLSTRK 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,605
Number of Sequences: 59808
Number of extensions: 267131
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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