Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1075
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006768-1|AAF60576.2| 433|Caenorhabditis elegans Hypothetical ... 115 2e-26
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 31 0.61
U88167-5|AAB42227.1| 107|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 29 1.4
Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical pr... 28 3.2
AC024817-47|AAP82632.1| 177|Caenorhabditis elegans Hypothetical... 28 3.2
AC024817-46|AAF59573.2| 289|Caenorhabditis elegans Hypothetical... 28 3.2
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 9.9
U46671-4|AAA85749.1| 429|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AC006768-1|AAF60576.2| 433|Caenorhabditis elegans Hypothetical
protein Y45G12B.3 protein.
Length = 433
Score = 115 bits (277), Expect = 2e-26
Identities = 55/94 (58%), Positives = 66/94 (70%)
Frame = +3
Query: 213 IKTPTFKGCFS*KRNRFAFHQSGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKG 392
I+ P K K A HQSG+NSGVIHAGIYY PGSLKAKLCV+GL+LSY++FD++
Sbjct: 46 IEKPQLKVALIEKEKELAVHQSGHNSGVIHAGIYYTPGSLKAKLCVEGLDLSYEFFDKEK 105
Query: 393 IKYSKCGKLIVATERSEVPRLFDLYERGLKNGVK 494
+ Y K GKLIVA E EVPRL L+ R NG +
Sbjct: 106 VPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCR 139
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 202 RELILKHPHLKVALVEKETDL 264
R+L+++ P LKVAL+EKE +L
Sbjct: 42 RQLLIEKPQLKVALIEKEKEL 62
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 287 VISTLVEGKSVSFSTKATFKCGCFNINSLAEAEPTMPPPI-TATSNCEVSPAP 132
+++ + G S+ S A C CF ++ A+P PPPI T+ S E+ P P
Sbjct: 332 IVAGCLAGASIVLSIIACLTC-CFIGSATVAAKPYSPPPIYTSPSPPELPPNP 383
>U88167-5|AAB42227.1| 107|Caenorhabditis elegans Hypothetical
protein D2092.8 protein.
Length = 107
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 224 GCFNINSLAEAEPTMPPPITATSNCEVSPAPA 129
GC + A P MPPP++ C +P PA
Sbjct: 28 GCGGAAASPCAAPPMPPPVSCGGGCGAAPYPA 59
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +3
Query: 276 SGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKGIKYSKCGKLIVATERSEVPRL 455
+G ++G++ + I+++ SL+A + L+L +Y KCG+ +A+ + L
Sbjct: 61 TGLSAGLVSSPIFWQDTSLQA-IAQASLDLYSHLATTCKFRYIKCGRTYLASSMANEILL 119
Query: 456 FDLYERGLKNGVK 494
+Y RG+ + K
Sbjct: 120 RRMYSRGVVHNDK 132
>Z69386-3|CAA93432.2| 322|Caenorhabditis elegans Hypothetical
protein ZK596.3 protein.
Length = 322
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 302 MNHATVISTLVEGKSVSFSTKATFKCGCFNINSLAEAEPTM 180
MNH ++ + T A F+C N S+A PT+
Sbjct: 127 MNHLVIVQVFFRSAVLLSMTHALFQCMLINFVSMANHSPTL 167
>AC024817-47|AAP82632.1| 177|Caenorhabditis elegans Hypothetical
protein Y54G2A.24b protein.
Length = 177
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 221 CFNINSLAEAEPTMPPPITATSNCEVSPAPA 129
C N N + +PPP+ AT+ + +PA A
Sbjct: 126 CLNANLEISFQQMLPPPLPATAKAKTAPAIA 156
>AC024817-46|AAF59573.2| 289|Caenorhabditis elegans Hypothetical
protein Y54G2A.24a protein.
Length = 289
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 221 CFNINSLAEAEPTMPPPITATSNCEVSPAPA 129
C N N + +PPP+ AT+ + +PA A
Sbjct: 238 CLNANLEISFQQMLPPPLPATAKAKTAPAIA 268
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical protein
T24A11.1a protein.
Length = 938
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -2
Query: 302 MNHATVISTLVEGKSVSFSTKATFKCGCFNINSLAEAEPTMPPPI----TATSNCEVSPA 135
++ AT +S + S S+ ++N LA PT P PI ++SN SP
Sbjct: 862 LSRATSLSEMSSFDSFGPSSPPASSTSSSSLNMLASMSPTRPQPIPISCKSSSNSISSPR 921
Query: 134 PA 129
P+
Sbjct: 922 PS 923
>U46671-4|AAA85749.1| 429|Caenorhabditis elegans Hypothetical
protein C14E2.4 protein.
Length = 429
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 60 FFRYCHFSLFRFLFSYFN 7
FFR C + FR FSYFN
Sbjct: 310 FFRKCSETFFRSNFSYFN 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,247
Number of Sequences: 27780
Number of extensions: 216140
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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