Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1075
(495 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56840.1 68416.m06321 FAD-dependent oxidoreductase family pro... 81 5e-16
At4g22540.2 68417.m03252 oxysterol-binding family protein simila... 30 0.98
At4g22540.1 68417.m03253 oxysterol-binding family protein simila... 30 0.98
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 30 0.98
At1g50090.1 68414.m05619 aminotransferase class IV family protei... 28 4.0
At3g13040.2 68416.m01625 myb family transcription factor contain... 27 5.3
At3g13040.1 68416.m01624 myb family transcription factor contain... 27 5.3
At3g10650.1 68416.m01281 expressed protein 27 6.9
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 27 6.9
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 27 9.2
At5g24740.1 68418.m02920 expressed protein 27 9.2
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 27 9.2
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 27 9.2
>At3g56840.1 68416.m06321 FAD-dependent oxidoreductase family
protein contains Pfam profile PF01266 FAD dependent
oxidoreductase
Length = 483
Score = 80.6 bits (190), Expect = 5e-16
Identities = 40/72 (55%), Positives = 47/72 (65%)
Frame = +3
Query: 276 SGNNSGVIHAGIYYKPGSLKAKLCVKGLNLSYKYFDQKGIKYSKCGKLIVATERSEVPRL 455
S NS V+HAGIYY P SLKAK CV+G L YKY + I + K GKLIVAT SE+P+L
Sbjct: 119 SSRNSEVVHAGIYYPPNSLKAKFCVRGRELLYKYCSEYEIPHKKIGKLIVATGSSEIPKL 178
Query: 456 FDLYERGLKNGV 491
L G +N V
Sbjct: 179 DLLMHLGTQNRV 190
>At4g22540.2 68417.m03252 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 510
Score = 29.9 bits (64), Expect = 0.98
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 359 QTFDTQFCFKGTRFIINTCMNHATVISTLVEGKSVSF 249
+T++ F KG RF +H TVI+ EGK F
Sbjct: 219 ETYEADFPEKGIRFFSEKVSHHPTVIACHCEGKGWKF 255
>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 721
Score = 29.9 bits (64), Expect = 0.98
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 359 QTFDTQFCFKGTRFIINTCMNHATVISTLVEGKSVSF 249
+T++ F KG RF +H TVI+ EGK F
Sbjct: 430 ETYEADFPEKGIRFFSEKVSHHPTVIACHCEGKGWKF 466
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 29.9 bits (64), Expect = 0.98
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 359 QTFDTQFCFKGTRFIINTCMNHATVISTLVEGKSVSF 249
+T++ F KG RF +H TVI+ EGK F
Sbjct: 410 ETYEADFPEKGIRFFSEKVSHHPTVIACHCEGKGWKF 446
>At1g50090.1 68414.m05619 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 367
Score = 27.9 bits (59), Expect = 4.0
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Frame = -2
Query: 314 INTCMNHATVISTLVEGKSVSFS-----TKATFK-------CGCF----NINSLAEAEPT 183
+ +C N++ V+ +L+E KS FS AT K C F NI S T
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTCNIFILKGNIVSTPPTSGT 260
Query: 182 MPPPITATSNCEVS 141
+ P IT S CE++
Sbjct: 261 ILPGITRKSICELA 274
>At3g13040.2 68416.m01625 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 360 NLSYKYFDQKGIKYSKCGKLIVATERSEVPRLFDLYERGL 479
N SY DQ +++ + T+R+E PRL ++YE L
Sbjct: 165 NDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPL 204
>At3g13040.1 68416.m01624 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 360 NLSYKYFDQKGIKYSKCGKLIVATERSEVPRLFDLYERGL 479
N SY DQ +++ + T+R+E PRL ++YE L
Sbjct: 165 NDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPL 204
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 260 SVSFSTKATFKCGCFNINSLAEAEPTMPPPITATSNCEVSPAPALYLRNVPVVT 99
S SF+T +T F +S A T P A++N SP+P + P T
Sbjct: 1107 SSSFTTSSTPTTFSFGGSSAATVSSTTTPIFGASTNNTPSPSPIFGFGSTPPTT 1160
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 165 SDWRRHSRLCFSQGVNIKTPTFKGCFS*KRNRFAFHQSGNNSGVIHAGIYYKPGSLKAKL 344
SDW+ HS+ C ++ T FS +R+ F H++ ++ LK+
Sbjct: 159 SDWKAHSKTCGTREYRCDCGTI---FS-RRDSFITHRAFCDALAEETARLNAASHLKSFA 214
Query: 345 CVKGLNLSYKY 377
G NL+Y Y
Sbjct: 215 ATAGSNLNYHY 225
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 26.6 bits (56), Expect = 9.2
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Frame = -2
Query: 299 NHATVISTLVEGKSVSFSTKATFK--------CG-CFNINSLAEAEP---TMPPPITATS 156
NH +STLV VS + T K C C N S ++ P + PPP T T+
Sbjct: 4 NHLYTLSTLVVMLLVSVTPTVTSKDEVVSCTMCSSCDNPCSPVQSSPPPPSPPPPSTPTT 63
Query: 155 NCEVSPAP 132
C P+P
Sbjct: 64 ACPPPPSP 71
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -2
Query: 194 AEPTMPPPITATSNCEVSPAPALYLRNVPVVTG*R*LKFSKNRTHFFAIAIFLSFG 27
++PT+ P I T + ++S + RN+PV F+KN+ A+ I + G
Sbjct: 2798 SDPTLRPLIYDTGSKDISSEDTPHARNIPV--------FNKNQRSIVALPIVVPIG 2845
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 272 VEGKSVSFSTKATFKCGCFNINSLAEAEPTMPPPITATS 156
VE SVS++ K +F I EA + PP A+S
Sbjct: 660 VESDSVSYTDKISFSVSKLRIRDQQEATSSSSPPHEASS 698
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 272 VEGKSVSFSTKATFKCGCFNINSLAEAEPTMPPPITATS 156
VE SVS++ K +F I EA + PP A+S
Sbjct: 660 VESDSVSYTDKISFSVSKLRIRDQQEATSSSSPPHEASS 698
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,053
Number of Sequences: 28952
Number of extensions: 193131
Number of successful extensions: 571
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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