Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1074
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.34 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   5.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   9.8  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   9.8  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.8  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 616 CLRCWGKSGNWNSWR 572
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 293 RDSLNSAMASSLIFRKRSRIPNSWEGIRPCTSS 195
           R S    M  +  F+ RSRI  +W  IRP  +S
Sbjct: 369 RQSETEGMEWAFAFKSRSRITVNWSLIRPFIAS 401


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 160 LLHKHESLRKFHDD---VQGRIPSQEFGILDLLRKMREEAIALFK 285
           L ++ E + KF D    ++  + + E   LDLLRK  E++I+L +
Sbjct: 654 LAYRQEKISKFTDPSSVIRSDLWTVEVDHLDLLRKQIEDSISLHR 698


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 223 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 47
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 46  RS 41
           RS
Sbjct: 334 RS 335


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 323 CRNIQNLWHNRDSLNSAMASSLIFRK 246
           C +++ LW+  D+  S ++ SLIF++
Sbjct: 557 CNSVRYLWNTIDTEFSTVSHSLIFQR 582


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +2

Query: 347 YMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDG 508
           YM +    YA+ I + + S+T   + P+  E    +   +   N ++++   DG
Sbjct: 213 YMKENNKAYAFTITVTEYSETIPSLWPSTKEFIKMHPNALHPNNALNFISNDDG 266


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 211 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEKRQNLLLLF 53
           DL HH +  F GF VC+  ++  + + + D + L    + +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 274  RWLLPSFFVKDREFQILGKESDLVHHHEIFVGFHV 170
            R+ +  +F+K  E Q   K  D +HH EI++  H+
Sbjct: 1043 RFWIKEYFLK--EVQASWKTDDNLHHGEIYLRNHI 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,296
Number of Sequences: 5004
Number of extensions: 54422
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)