Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1074
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-2|CAB05130.1|  344|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    28   5.2  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    28   5.2  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    27   9.1  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   9.1  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   9.1  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    27   9.1  

>Z82260-2|CAB05130.1|  344|Caenorhabditis elegans Hypothetical
           protein C32H11.3 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 YFVNMEVKNKMDYVKMMDGALTRKYVIITELS 547
           Y +N+E  NK+D + + D   TR Y    +L+
Sbjct: 218 YVINLEASNKLDTLLIQDAQYTRDYADYVQLN 249


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 473 KNKMDYVKMMDGALTRKYVIITELSKKTNNS 565
           +++MD VKM +  LT ++V+ T +S+K   S
Sbjct: 808 ESEMDRVKMNERQLTEQHVLSTSISRKIKRS 838


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 473 KNKMDYVKMMDGALTRKYVIITELSKKTNNS 565
           +++MD VKM +  LT ++V+ T +S+K   S
Sbjct: 808 ESEMDRVKMNERQLTEQHVLSTSISRKIKRS 838


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 184 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 77
           V F V VA + GLD+E  GDFV+ S   D ++++ +
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 368 RTFPGSCRLWRSMLFCRNIQNLWHNRDSLNSAMASSLIFRKRSRIPNSWE 219
           R F  +CRL R +    + +N+ ++RD   S + SS    +  +IPN+ E
Sbjct: 71  RWFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSSK-NNRHLQIPNTVE 119


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 490 VVHFIFNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 353
           ++H + N+ ++  +RI FV     EAG ++ L  + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 490 VVHFIFNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 353
           ++H + N+ ++  +RI FV     EAG ++ L  + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 368 RTFPGSCRLWRSMLFCRNIQNLWHNRDSLNSAMASSLIFRKRSRIPNSWE 219
           R F  +CRL R +    + +N+ ++RD   S + SS    +  +IPN+ E
Sbjct: 83  RWFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSSK-NNRHLQIPNTVE 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,467
Number of Sequences: 27780
Number of extensions: 292840
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)