Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1074
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17620.1 68417.m02636 glycine-rich protein                          30   1.6  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    29   2.8  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    28   6.4  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    28   6.4  
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    27   8.5  

>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 502 GWCL---DEKICYNYGIIKENEQFVM 570
           G CL   DE +C+ YG +KENE +++
Sbjct: 480 GVCLAFADEVLCWLYGTVKENEDYIL 505


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 143 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEK*GK 265
           I  +K C    KA E F  MYK G +P  + +S     Y K GK
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGK 271


>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 145 RGQQGLLHKHESLRKFHDDVQGRIPSQEFGILD-LLRKMREEAI 273
           + +  L H  +   K+ DD++ RIP QE   ++ LL+++ EE +
Sbjct: 314 KNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQRVGEETL 357


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 266 KPSRCSSCLYYAKDF--ECFYKTACYARVYMN 355
           KP +C+SCL Y   F  +C + +AC   ++MN
Sbjct: 338 KPFKCTSCLQYFDGFKYKCNFNSAC---IHMN 366


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 362 FPGSCRLWRSMLFCRNIQNLWHNRDSLNSAMASSLIFRKRSRI 234
           FPG    W+ +   RN+Q L+ + D+L  +  S + F    RI
Sbjct: 285 FPGLGNAWKLITGLRNVQQLYLSPDTLEVSFLSLVYFWLVGRI 327


>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
           similar to GI:11993492; RNA binding protein - Homo
           sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
           carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +2

Query: 272 SRCSSCLYYAKDFECFYKTACYARVYMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQ 451
           S+C  C     +  CF  +    +V   Q     A    I     +  F+LP+P+    +
Sbjct: 717 SQCCHCTEVLSEVACFEDSLRTLKVKQRQNHEKLATGKGIPLTPQSRYFLLPSPWLVQWR 776

Query: 452 YFVNMEVKN 478
            ++NM  KN
Sbjct: 777 IYINMTGKN 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,604
Number of Sequences: 28952
Number of extensions: 269030
Number of successful extensions: 731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)