Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1073
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 2.7
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 27 3.6
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 27 3.6
02_03_0213 + 16496215-16496617,16496939-16497057 27 3.6
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 27 4.8
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 27 6.3
10_08_0292 + 16560093-16560553,16560754-16560913 26 8.4
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 26 8.4
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 2.7
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = -2
Query: 365 RNSNEFVIFKEDSVPMTEIMKMLD 294
RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 222 TEGGFPFQLFVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 100
TE P +F+ FDN G LAPF S + D K + PL+
Sbjct: 433 TEKRRPCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 114 GFPLDRPVVDALFKVPNMYFKDIFIYHEGEXSLTN 10
G+P D P++D+L V Y +F++ EG S N
Sbjct: 319 GYPEDSPIIDSLEFVDQEY---VFVHPEGSSSSMN 350
>02_03_0213 + 16496215-16496617,16496939-16497057
Length = 173
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 320 MTEIMKMLDEGKVPFD-MSEEFCTCLKDSCCLEVLKVDXXXXXXXXXXXSTTKART 156
+TE+ +M D+ KVP D + E+ KD +E VD +TT +R+
Sbjct: 19 LTEVHRMRDKRKVPTDTLEEDMAFIKKDFQLMESFLVDAAEKRRQTAAAATTTSRS 74
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 143 SKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGMYRTLP 268
S G +++P+LS G K W G P GS + + Y P
Sbjct: 619 SNGDETVPVLSAGYMCAKGWRGKTRFNPSGSKTYVREYSHSP 660
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 132 LDNKPL--GFPLDRPVVDALFKVPNMYFKDIFIYHEGEXSLTNSC 4
+DNK L G PL + + L+ + N DIF H+ S TN C
Sbjct: 433 MDNKLLLTGTPLQNNLAE-LWSLLNFILPDIFSSHQEFESCTNLC 476
>10_08_0292 + 16560093-16560553,16560754-16560913
Length = 206
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 102 PEGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRAG 203
P GS A+ + E S C+C + ++ Q AG
Sbjct: 158 PSGSSRAHDSTAEFLIEHSKCVCVSVQKKGQNAG 191
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 359 SNEFVIFKEDSVPMTEIMKMLDEGKVPFDMSEEFCTCLKDSCCLEVL 219
S FV +ED + D+ DMSE+ KD CC E L
Sbjct: 1026 SKNFV--QEDGGSTKRARLLPDQSDEYTDMSEDILASQKDDCCFEDL 1070
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,839,369
Number of Sequences: 37544
Number of extensions: 202589
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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