Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1073
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     29   1.2  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    27   5.0  
SB_46252| Best HMM Match : Histone (HMM E-Value=4.8e-33)               27   6.5  
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)                  27   6.5  
SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)                   26   8.7  
SB_58649| Best HMM Match : Histone (HMM E-Value=4.5e-12)               26   8.7  

>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 224 PLGSMSLLGMYRTLP--TYQKVLFLRRASS 307
           PL  MSLLG+YR LP   Y+  L L R  S
Sbjct: 94  PLNKMSLLGVYRVLPYHIYEVNLSLERRDS 123


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 78   IMHQQRGDPEGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRA 200
            ++HQ++   E  Q++ C E+++ +E +  L C +   KQRA
Sbjct: 1623 LLHQEKLLKEKQQQSACVEKQVEQELA-LLRCELAEAKQRA 1662


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 150 PFESFVLDNKPLGFPLDRPV 91
           PF+ FV   K +GFP+ +PV
Sbjct: 250 PFDDFVKRYKVIGFPMHKPV 269


>SB_46252| Best HMM Match : Histone (HMM E-Value=4.8e-33)
          Length = 134

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 65  LGTLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPL 169
           +  +   + +GR +GK +G  S+T+ S+     P+
Sbjct: 1   VANIQTLTMSGRGKGKAKGTKSKTRSSRAGLQFPV 35


>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
          Length = 129

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 68  GTLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPL 169
           G L   + +GR +GK +G  S+T+ S+     P+
Sbjct: 67  GLLVVMTMSGRGKGKAKGTKSKTRSSRAGLQFPV 100


>SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)
          Length = 332

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 83  ASTTGRSRGKPRGLLSR 133
           A+T+ RS G PRG LSR
Sbjct: 311 AATSSRSHGNPRGWLSR 327


>SB_58649| Best HMM Match : Histone (HMM E-Value=4.5e-12)
          Length = 74

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 92  TGRSRGKPRGLLSRTKDSKGAKSLPL 169
           +GR +GK +G  S+T+ S+     P+
Sbjct: 2   SGRGKGKAKGTKSKTRSSRAGLQFPI 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,252
Number of Sequences: 59808
Number of extensions: 240510
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)