Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1073
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.33 
At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A...    29   1.3  
At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase fa...    27   3.1  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   5.4  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    26   9.4  
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot...    26   9.4  

>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 141 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 43
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B' (B'beta) identical to B'
           regulatory subunit of PP2A [Arabidopsis thaliana]
           GI:2160692; similar to SWISS-PROT:Q28653
           serine/threonine protein phosphatase 2A, 56 kDa
           regulatory subunit, delta isoform (PP2A, B subunit, B'
           delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
           B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
           isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
           cuniculus]; contains Pfam domain, PF01603: Protein
           phosphatase 2A regulatory B subunit (B56 family)
          Length = 499

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 212 PPSVPLGSMSLLGMYRTLPTYQK-VLFLRR 298
           PP  PLGS+  L ++R +P  ++  LFLR+
Sbjct: 61  PPPPPLGSVEPLPLFRDVPVSERQTLFLRK 90


>At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           lecithin:cholesterol acyltransferase [Rattus norvegicus]
           GI:2306762; contains Pfam profile PF02450:
           Lecithin:cholesterol acyltransferase
           (phosphatidylcholine-sterol acyltransferase)
          Length = 665

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 134 TKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGMYRTLP 268
           T+ + G +S+P++S G    K W G     P G  + L  Y+  P
Sbjct: 561 TRFADGDESVPVISAGFMCAKGWRGKTRFNPSGMDTFLREYKHKP 605


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 142 FERSQVLAFVVEWIDENKELEWESTFSTSRQH 237
           F+  +  A+V+ WI  +  L +E  +S   QH
Sbjct: 236 FDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQH 267


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1219

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 252 CTELFR-HIKRYFSFVEHLHNFSHWHG 329
           C   F+ H++R  SF+ +   + HWHG
Sbjct: 581 CEAEFKLHLRRGLSFLPNELTYLHWHG 607


>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 549

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 74  LNNASTTGRSRGKPRGLLSRTKDSK-GAKSLPLLS 175
           L N   +GR+ G P G+L   K  K G K+ PL +
Sbjct: 174 LKNFLDSGRTLGLPNGVLINGKSGKVGGKNEPLFT 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,219
Number of Sequences: 28952
Number of extensions: 166866
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)