Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1072
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    29   0.88 
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.2  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 120 EVVRHCGKNSFRITERILLVNSFFSYLAESLERLFQLHPNV 242
           +V R C     +I  +I   N+F  +L E+ +RL +LHP++
Sbjct: 287 QVCRLCKSQIKQICPKIKQPNAFQIFLKENSKRLRKLHPHI 327


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 EVVRHCGKNSFRITERILLVNSFF 191
           E+V H G N   I  R++ VN+FF
Sbjct: 80  EIVSHVGGNELLINRRVIDVNNFF 103


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 607 YLRSEN-PFSTTGEIFGS*HLESCIHVCDLLFFSLDL 500
           Y  SEN PFS T +   +   E   ++CDL  +S+DL
Sbjct: 340 YSSSENNPFSFTSQDVEALKDELSSNLCDLYLWSIDL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,022
Number of Sequences: 5004
Number of extensions: 42507
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)